PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 187aa MW: 20391.7 Da PI: 4.6693

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0083s00810.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.1	4.6e-18	28	78	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+ +l+g Vradi0083s00810.1 28 PVYRGVRKRR-WGKWVSEIREPRK---KNRIWLGSFPVPEMAARAYDVAAYCLKG 78 68***887.******854...59**********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.6E-12	28	78	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.749	29	86	IPR001471	AP2/ERF domain
SMART	SM00380	5.6E-35	29	92	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-21	29	88	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.8E-31	29	87	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-12	30	41	IPR001471	AP2/ERF domain
CDD	cd00018	1.69E-30	30	87	No hit	No description
PRINTS	PR00367	1.0E-12	68	88	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MDHQPPPCPD DDLTAATTAT PRSGTRHPVY RGVRKRRWGK WVSEIREPRK KNRIWLGSFP 60 VPEMAARAYD VAAYCLKGRK AQLNFPDEVD SLPLPSSRTA RDIQAAAAQA ARMMKADGSD 120 VKSSIADDDG DSGGDDFWGE IELPELMDGE CCWGCPGGSS WSTSGDIAGW TEEEFSPQQP 180 SFLACL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-18	24	90	9	76	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00120	DAP	Transfer from AT1G01250	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0083s00810.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014491530.1	1e-135	ethylene-responsive transcription factor ERF023-like
Swissprot	Q1ECI2	1e-53	ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBL	A0A1S3TCP5	1e-134	A0A1S3TCP5_VIGRR; ethylene-responsive transcription factor ERF023-like
STRING	XP_007147322.1	1e-104	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6375	28	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01250.1	1e-45	ERF family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]