PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB

Protein Properties

Length: 354aa MW: 38279.6 Da PI: 6.7476

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0073s00080.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.5	1.3e-12	11	55	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++e d+ + +a + ++ + +W++Ia+ ++ g+tl+++k+++ Vradi0073s00080.1 11 EWSKEQDKAFENALAIHPEDasdRWEKIAADVP-GKTLEEIKHHYK 55 7******************************.*********7 PP
2	Myb_DNA-binding	28.4	3.9e-09	184	225	6	47
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Vradi0073s00080.1 184 KDLIRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 225 67888999*********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.892	7	62	IPR017884	SANT domain
SMART	SM00717	9.5E-11	8	60	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.72E-11	10	66	IPR009057	Homeodomain-like
Pfam	PF00249	8.2E-10	11	55	IPR001005	SANT/Myb domain
CDD	cd00167	1.98E-10	11	58	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-5	11	55	IPR009057	Homeodomain-like
PROSITE profile	PS51293	7.399	177	230	IPR017884	SANT domain
SMART	SM00717	2.5E-4	178	228	IPR001005	SANT/Myb domain
Pfam	PF00249	5.4E-7	184	225	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.57E-10	185	231	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.7E-12	185	228	IPR006447	Myb domain, plants
CDD	cd00167	8.18E-6	187	226	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.6E-6	189	224	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MTADEVGSSS EWSKEQDKAF ENALAIHPED ASDRWEKIAA DVPGKTLEEI KHHYKLLVED 60 VNQIESGCVP LPSYNYPSEG SASHASDEGA GKKGGSSWNS NNESSHGNKA SRSDQERRKG 120 IAWTEDEHRV YNHLWSSKDE LMEECKRIGM NGVEEARRKE VEEWISVDGF PSTTILNFYK 180 EMNKDLIRLF LLGLEKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS 240 INDITSVNNG DVSAPQGPIT GQTNGSAANS GKPTKPAPPT PSAAPSVGIY AAPTIGQPIG 300 GPLVSAVGTP VNLPAPAHMA YGLGAPVPGT VVPGAPMNLG PVPYPMPHTS AHR*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MTADEVGSSS EWSKEQDKAF ENALAIHPED ASDRWEKIAA DVPGKTLEEI KHHYKLLVED  60
VNQIESGCVP LPSYNYPSEG SASHASDEGA GKKGGSSWNS NNESSHGNKA SRSDQERRKG  120
IAWTEDEHRV YNHLWSSKDE LMEECKRIGM NGVEEARRKE VEEWISVDGF PSTTILNFYK  180
EMNKDLIRLF LLGLEKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS  240
INDITSVNNG DVSAPQGPIT GQTNGSAANS GKPTKPAPPT PSAAPSVGIY AAPTIGQPIG  300
GPLVSAVGTP VNLPAPAHMA YGLGAPVPGT VVPGAPMNLG PVPYPMPHTS AHR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-18	7	74	6	73	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00500	DAP	Transfer from AT5G08520	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0073s00080.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020220283.1	1e-178	transcription factor SRM1
Refseq	XP_020220361.1	1e-178	transcription factor SRM1
Refseq	XP_020220433.1	1e-178	transcription factor SRM1
Refseq	XP_029127979.1	1e-178	transcription factor SRM1
Swissprot	Q9FNN6	1e-104	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A151UD74	1e-176	A0A151UD74_CAJCA; Myb-like protein J
STRING	XP_007153659.1	1e-167	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4694	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-57	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]