PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0073s00080.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 354aa    MW: 38279.6 Da    PI: 6.7476
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0073s00080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-121155345
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        W++e d+ + +a + ++ +   +W++Ia+ ++ g+tl+++k+++ 
  Vradi0073s00080.1 11 EWSKEQDKAFENALAIHPEDasdRWEKIAADVP-GKTLEEIKHHYK 55
                       7********************************.***********7 PP
2Myb_DNA-binding28.43.9e-09184225647
                        HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +++  l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Vradi0073s00080.1 184 KDLIRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 225
                        67888999*********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.892762IPR017884SANT domain
SMARTSM007179.5E-11860IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-111066IPR009057Homeodomain-like
PfamPF002498.2E-101155IPR001005SANT/Myb domain
CDDcd001671.98E-101158No hitNo description
Gene3DG3DSA:1.10.10.602.2E-51155IPR009057Homeodomain-like
PROSITE profilePS512937.399177230IPR017884SANT domain
SMARTSM007172.5E-4178228IPR001005SANT/Myb domain
PfamPF002495.4E-7184225IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-10185231IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-12185228IPR006447Myb domain, plants
CDDcd001678.18E-6187226No hitNo description
Gene3DG3DSA:1.10.10.604.6E-6189224IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MTADEVGSSS EWSKEQDKAF ENALAIHPED ASDRWEKIAA DVPGKTLEEI KHHYKLLVED  60
VNQIESGCVP LPSYNYPSEG SASHASDEGA GKKGGSSWNS NNESSHGNKA SRSDQERRKG  120
IAWTEDEHRV YNHLWSSKDE LMEECKRIGM NGVEEARRKE VEEWISVDGF PSTTILNFYK  180
EMNKDLIRLF LLGLEKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS  240
INDITSVNNG DVSAPQGPIT GQTNGSAANS GKPTKPAPPT PSAAPSVGIY AAPTIGQPIG  300
GPLVSAVGTP VNLPAPAHMA YGLGAPVPGT VVPGAPMNLG PVPYPMPHTS AHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-18774673RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0073s00080.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020220283.11e-178transcription factor SRM1
RefseqXP_020220361.11e-178transcription factor SRM1
RefseqXP_020220433.11e-178transcription factor SRM1
RefseqXP_029127979.11e-178transcription factor SRM1
SwissprotQ9FNN61e-104SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A151UD741e-176A0A151UD74_CAJCA; Myb-like protein J
STRINGXP_007153659.11e-167(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-57MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]