PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0048s00350.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 481aa    MW: 51217.1 Da    PI: 6.2638
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0048s00350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.2e-31235293259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  Vradi0048s00350.1 235 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNLLVITYTSEHNHP 293
                        699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-31228295IPR003657WRKY domain
PROSITE profilePS5081133.143229295IPR003657WRKY domain
SuperFamilySSF1182902.35E-26232295IPR003657WRKY domain
SMARTSM007744.0E-38234294IPR003657WRKY domain
PfamPF031061.2E-25236293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MCNILHPIMD NYQGDLSDII RASGASYGSC SMGTSSSKAC APFSLDHWQF SSVLEGFDGN  60
FGDPFSNTRD PFLHQLELPA CFNSATSSAE ISSSGALEEA TFFGGGVAAS TSSSRNSCVL  120
KETIFEDDGT RRPCNSILAN MTQISPPNDK LPMSPLVESL SRALKPSGVV FGDTMINVKT  180
SEDDCLIFQT ELIRVIFGNL NFSESMVRKS LAKKSICVPA PAAPNSRQSG EVVPSDLWAW  240
RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QVERSRTDPN LLVITYTSEH NHPWPTHRNS  300
LAGSSRSQPS SKGNNFGASK NAETSPQNDE EQQEESNSDS NNVNNSACVQ EDGDFSDIGL  360
PYKPISNIKS YQQQQLDQGL FAEFAEIEKA QSLNLMSPPQ GPPWALAVGG VALAGAGKAS  420
GGRLTRVVAQ QGVGVGVGRK AQWALERAEV EGVGGLLAVV GGVAGRALDV AYGPAGRIGR  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-24209296280Disease resistance protein RRS1
5w3x_D5e-24209296280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0048s00350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490112.10.0probable WRKY transcription factor 35
TrEMBLA0A1S3T8M40.0A0A1S3T8M4_VIGRR; probable WRKY transcription factor 35
STRINGXP_007159024.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-65WRKY DNA-binding protein 35