PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0048s00100.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 491aa    MW: 54091.2 Da    PI: 6.2046
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0048s00100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.3e-30249308159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ +d +++++tYeg+Hnh+
  Vradi0048s00100.1 249 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCIDDMSILITTYEGTHNHP 308
                        58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-32234310IPR003657WRKY domain
SuperFamilySSF1182907.06E-28242310IPR003657WRKY domain
PROSITE profilePS5081129.207244310IPR003657WRKY domain
SMARTSM007742.7E-37249309IPR003657WRKY domain
PfamPF031062.5E-27250308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MGRSQNPTNM EIDLSLKIDA DDDDDEQKPQ VDEQVKEYNH QQKMPQILDH NKEEVPEAAA  60
GEIEDDASVV QTSFQDNSKT KELSVLQMEM ESMKEENKVL RKVVEQTMKD YYDLQMKFSA  120
IQENNKRKDH EISLSLQDIA TTSGEGPSRI LEIVNKKIQS APSPPNTDDD SLSESELGLS  180
LRLQPSTSQK ESDVGNKEVR KDQQLASFVS VQNKLQRTHE LPGITTHAIS PPNRKARVSV  240
RARCEAATMN DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPG CPVRKQVQRC IDDMSILITT  300
YEGTHNHPLP VGATAMASTA SAAASFMLLD SSNPISDGTS SFTQAPLPYN TFHPLNSASN  360
FRSINPSDPS KGVVLDLTSN LSEPLRFSTG SSSNTTTDTR FSWMPNKYHG GGAMTTSNNF  420
HKPRPVDIHD RMWKGEESKQ LDENVSAIAS DPKFRVAVAA AITSLMNKES HTATHTIGTS  480
FGPRSGQNGS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21236312176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0048s00100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490118.20.0probable WRKY transcription factor 9
SwissprotQ9C9F05e-83WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A1S3T8M50.0A0A1S3T8M5_VIGRR; probable WRKY transcription factor 9
STRINGXP_007159029.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.19e-73WRKY DNA-binding protein 9