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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0023s00350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WRKY | ||||||||
Protein Properties | Length: 197aa MW: 21733.3 Da PI: 6.5195 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 78.6 | 7e-25 | 77 | 128 | 2 | 52 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitY 52 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers d v+ Y Vradi0023s00350.1 77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSPGDAAVLLSQY 128 69*************************998**************99998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-24 | 69 | 129 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.62E-21 | 72 | 129 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-27 | 76 | 136 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.832 | 77 | 137 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-20 | 78 | 129 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MYHRRFNKPI QVANPDEPEP EPEPTSEPGP ASPSSCDDTK TEAPSPKKRR EIKKRVVTIP 60 IGDVDGSKSK GETYPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSPGD 120 AAVLLSQYHF RWFDDVASTG VLESPICGEV DDVAMPMREE DESLFADLDE LPECSVVFRR 180 GNIPRSSAIR CGGITG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-16 | 77 | 128 | 15 | 65 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0023s00350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019587 | 1e-132 | EU019587.1 Glycine max WRKY52 (WRKY52) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016171815.1 | 4e-95 | probable WRKY transcription factor 69 isoform X2 | ||||
Swissprot | Q93WV5 | 6e-48 | WRK69_ARATH; Probable WRKY transcription factor 69 | ||||
TrEMBL | V7BXD1 | 6e-72 | V7BXD1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007149724.1 | 1e-72 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2770 | 34 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.2 | 6e-47 | WRKY DNA-binding protein 69 |
Publications ? help Back to Top | |||
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