PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0023s00130.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 584aa    MW: 64805.4 Da    PI: 5.9311
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0023s00130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS415.35.4e-1272105811373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++lL++cA+a+++++ +  ++l+ + ++ +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    +e l++++l++e++P+lk
  Vradi0023s00130.1 210 LKQLLIACAKALHENNIKDFDQLVGKARDAVSINGEPIQRLGAYMVEGLVARKEASGKSIYHALRCREPE---GEELLSYMQLLFEICPYLK 298
                        689******************************************************************9...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl 181
                        f++++aN aI ea  +e+r+HiiDf+i qG QW++LlqaLa+Rp+g+p++RiTg+++p s+     + l  +g+rL  + e++g+p+ef+  
  Vradi0023s00130.1 299 FGYMAANGAIAEACRNEDRIHIIDFQIAQGSQWMTLLQALAARPGGAPHVRITGIDDPVSKyarGGDGLDIVGKRLGLMSEKFGIPVEFHG- 389
                        **********************************************************99999999*************************. PP

               GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.e 272
                        v    e+++ e+L+++pgEalaVn+ lqlh++ desv+++++rd +L+lvkslsPkv ++veqe+++n+++F++rf+e+l+yy a+f+s+ +
  Vradi0023s00130.1 390 VPVFGEEVTREMLDIRPGEALAVNFPLQLHHTADESVHVSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFFNRFIETLNYYLAIFESIdA 481
                        68899*************************************************************************************66 PP

               GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                        + lpr+s+eri+vE+++l+r+ivn++aceg+er+erhe l+kW++rl++aGF++ pls+++++ +  ll+ ++ + y++ e++g+++lgWkd
  Vradi0023s00130.1 482 SLLPRDSKERINVEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFTQSPLSSYVNSVIGILLKCYS-EHYTLLEKDGAMLLGWKD 572
                        668******************************************************************9888.66**************** PP

               GRAS 365 rpLvsvSaW 373
                        r+L+s+SaW
  Vradi0023s00130.1 573 RNLISASAW 581
                        ********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.843184563IPR005202Transcription factor GRAS
PfamPF035141.9E-124210581IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MDSQQLFSFG VASAGLPYMP SFPTVPSLPN RLLGSLKYDT GNSPNSPFST YFDSDTLSAL  60
SDSHEQYSPG EILSGVSSSC NSSLETNQYM HKSISSVDFI DNFPLYSAWN SFPQNLNSSL  120
KIQHALLELE TALMAPDDDQ VTTPNTLAGS SRQMASGHRY KPWRHENDGS QYAQPSYVPS  180
SRLSSEVVHV EKRQKLTEEP SLQAFPPNDL KQLLIACAKA LHENNIKDFD QLVGKARDAV  240
SINGEPIQRL GAYMVEGLVA RKEASGKSIY HALRCREPEG EELLSYMQLL FEICPYLKFG  300
YMAANGAIAE ACRNEDRIHI IDFQIAQGSQ WMTLLQALAA RPGGAPHVRI TGIDDPVSKY  360
ARGGDGLDIV GKRLGLMSEK FGIPVEFHGV PVFGEEVTRE MLDIRPGEAL AVNFPLQLHH  420
TADESVHVSN PRDGLLRLVK SLSPKVTTLV EQESNTNTTP FFNRFIETLN YYLAIFESID  480
ASLLPRDSKE RINVEQHCLA RDIVNIIACE GKERVERHEL LGKWKSRLTM AGFTQSPLSS  540
YVNSVIGILL KCYSEHYTLL EKDGAMLLGW KDRNLISASA WHC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-5921758126378Protein SCARECROW
5b3h_A5e-5921758125377Protein SCARECROW
5b3h_D5e-5921758125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0023s00130.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522055.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1S3VUS00.0A0A1S3VUS0_VIGRR; scarecrow-like protein 21
STRINGXP_007149678.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-172scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]