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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0007s01710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 253aa MW: 27930.3 Da PI: 9.7241 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 38.1 | 3.5e-12 | 46 | 70 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+rlrWt++LH+rFv+a++qLGG++ Vradi0007s01710.1 46 KQRLRWTSDLHDRFVDAITQLGGPD 70 79*********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-10 | 44 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-8 | 46 | 71 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 8.4E-25 | 109 | 155 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MYHAKKFSSA SMVPYKSQGG AEQIANVEVL GGSAGKNATP SGGSGKQRLR WTSDLHDRFV 60 DAITQLGGPD SGKRRDNFSF GYLQSKTLKM RRGILETAFL AQILLRGGMP INDALRMQME 120 VQKRLHEQLE VQKQLQMRIE AQGKYLQKII EEQQKLGNTL TTSETLPLSH DKQSHPHSEA 180 SGSSDALAST LSPRKKQRID DGSKDGFTAS HVRKTEQKNE CNVGQLVPNL YDDAGFGFNL 240 ETNKDEHKES GQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0007s01710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014491019.1 | 1e-152 | myb family transcription factor PHL7 isoform X2 | ||||
TrEMBL | A0A1S3TB72 | 1e-151 | A0A1S3TB72_VIGRR; myb family transcription factor PHL7 isoform X2 | ||||
STRING | XP_007161823.1 | 1e-135 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13013 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-35 | G2-like family protein |