PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Vradi0007s01420.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 255aa MW: 29149.2 Da PI: 9.7298

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0007s01420.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0013	97	119	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C ++++++ +L H + H Vradi0007s01420.1 97 SCSVCFRVYPTSRLLSIHVSEvH 119 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.28	69	94	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	71	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	6.8	96	119	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	98	119	IPR007087	Zinc finger, C2H2
SMART	SM00355	7	134	159	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	136	159	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MAMEVENNHN QQLGFPFWKP LRRKFGPDSP FFAPGNLERE LLAKQVALEL TEEKEQLEKW 60 MQEEEGREIF CPIVGCGARL TSMDDFENHY NARHTASCSV CFRVYPTSRL LSIHVSEVHD 120 SFFQAKVARG YDMYECLVEK CGLKFKSYNR RHQHLVDKHK FPTSFEFFKK AKPSKKQRLK 180 SQQKKAVPKE KDAGMMEVEN ATVDDLVSAV SKLSTSDSTP SNISFGRRSK GLSFVPRTVQ 240 RRDQSNSAAS GTKR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0007s01420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095419	0.0	BT095419.1 Soybean clone JCVI-FLGm-14N2 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014491156.1	0.0	zinc finger protein 511
TrEMBL	A0A1S3TBL4	0.0	A0A1S3TBL4_VIGRR; zinc finger protein 511
STRING	XP_007161722.1	1e-178	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9718	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	1e-103	zinc ion binding;nucleic acid binding;zinc ion binding