PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0097s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | C3H | ||||||||
Protein Properties | Length: 784aa MW: 81783.6 Da PI: 5.7424 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.8 | 2.9e-11 | 278 | 302 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + + G+C+yG++Ck+aHg Vocar.0097s0008.1.p 278 WKTRICNKWKE-GHCPYGPTCKYAHG 302 8**********.*************9 PP | |||||||
2 | zf-CCCH | 37.6 | 3.7e-12 | 335 | 360 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C f rtG CkyGd+C+FaHg Vocar.0097s0008.1.p 335 KKTRICEEFVRTGSCKYGDKCTFAHG 360 59***********************8 PP | |||||||
3 | zf-CCCH | 36.3 | 9.3e-12 | 392 | 416 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC +f+ t C+yGd+C+FaHg Vocar.0097s0008.1.p 392 KTRLCERFMNTKSCPYGDKCTFAHG 416 8***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.92E-8 | 275 | 307 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-15 | 275 | 309 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.657 | 277 | 304 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-7 | 277 | 303 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 278 | 302 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-9 | 333 | 366 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.723 | 334 | 362 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-7 | 334 | 361 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.3E-10 | 335 | 360 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-14 | 336 | 365 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-14 | 389 | 421 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 390 | 417 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.9E-9 | 390 | 421 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.835 | 390 | 418 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-9 | 392 | 416 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 784 aa Download sequence Send to blast |
MYGNNTSMYA NMMGQQAGGM VGQQMGVAQM GTQLGGQMAG QSGQPMSQMQ SQLVGQMPQL 60 LTQAGQQQGA LQQPTPGTGM MTGLHGMTGM AGMSGMSGMN MSGMTGMNPA GGATATPANA 120 APGLMGQQGT GMMGQQGTGM VGQQGTGMMG QQGMNSGMSN WQTMAAGNPQ AMAAMQAYMQ 180 QYAMRMAAYQ RMAAAASAGG MSNPGGMGAM GSMGPMGAMG GMAGPMGAMG GMAGPMGAMG 240 GMAPGGMGLM GAQMQQQHHM RSSQQQAGQD GGENTRFWKT RICNKWKEGH CPYGPTCKYA 300 HGDADLRSPL PEGGKGGARA PKAEVDKRTM IELMKKTRIC EEFVRTGSCK YGDKCTFAHG 360 HNELRLAPST LTTQQQQQQG SKEGSKEGSL HKTRLCERFM NTKSCPYGDK CTFAHGHHEL 420 RSKGAVGTAA AGNRTQVQQK PRKPLQKGEG SGGAPVPIAG SKREREEPGS GGAAGEGGEA 480 GDNSTEAVEP AKRQHVGAAE AFEGGERQQQ GEEAPSQQQE RAGDGEDRWN WGSSPSPNRD 540 GGDAGDEIEM VEQPQRRGGD QQDDDEEGGR TAEEDADERP GCDTEIGSPN GAMEAAGADG 600 AAGGAGDVAV GHVSDHAAAG PAGTSEPECR LCAAMVKMGR DKMVAAVQQL DSTAAQKLGA 660 MVLAYGTPRF EQLWHKLSFG QLQTMLSKSE LSVADRIELL KAVSFHTHAS EEDREKLESQ 720 KYVSQGLPPV VADFVAMVLD GKEGSTQMAE YFAALEVCKT LYGVTEDEYF NVSSTMASLF 780 MNM* |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5512 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 6e-15 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0097s0008.1.p |