PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0097s0008.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C3H
Protein Properties Length: 784aa    MW: 81783.6 Da    PI: 5.7424
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0097s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.9e-11278302126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt++C+ + + G+C+yG++Ck+aHg
  Vocar.0097s0008.1.p 278 WKTRICNKWKE-GHCPYGPTCKYAHG 302
                          8**********.*************9 PP
2zf-CCCH37.63.7e-12335360126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt++C  f rtG CkyGd+C+FaHg
  Vocar.0097s0008.1.p 335 KKTRICEEFVRTGSCKYGDKCTFAHG 360
                          59***********************8 PP
3zf-CCCH36.39.3e-12392416226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          kt+lC +f+ t  C+yGd+C+FaHg
  Vocar.0097s0008.1.p 392 KTRLCERFMNTKSCPYGDKCTFAHG 416
                          8***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.92E-8275307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-15275309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.657277304IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7277303IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8278302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-9333366IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723334362IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-7334361IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-10335360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-14336365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-14389421IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5390417IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-9390421IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835390418IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9392416IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MYGNNTSMYA NMMGQQAGGM VGQQMGVAQM GTQLGGQMAG QSGQPMSQMQ SQLVGQMPQL  60
LTQAGQQQGA LQQPTPGTGM MTGLHGMTGM AGMSGMSGMN MSGMTGMNPA GGATATPANA  120
APGLMGQQGT GMMGQQGTGM VGQQGTGMMG QQGMNSGMSN WQTMAAGNPQ AMAAMQAYMQ  180
QYAMRMAAYQ RMAAAASAGG MSNPGGMGAM GSMGPMGAMG GMAGPMGAMG GMAGPMGAMG  240
GMAPGGMGLM GAQMQQQHHM RSSQQQAGQD GGENTRFWKT RICNKWKEGH CPYGPTCKYA  300
HGDADLRSPL PEGGKGGARA PKAEVDKRTM IELMKKTRIC EEFVRTGSCK YGDKCTFAHG  360
HNELRLAPST LTTQQQQQQG SKEGSKEGSL HKTRLCERFM NTKSCPYGDK CTFAHGHHEL  420
RSKGAVGTAA AGNRTQVQQK PRKPLQKGEG SGGAPVPIAG SKREREEPGS GGAAGEGGEA  480
GDNSTEAVEP AKRQHVGAAE AFEGGERQQQ GEEAPSQQQE RAGDGEDRWN WGSSPSPNRD  540
GGDAGDEIEM VEQPQRRGGD QQDDDEEGGR TAEEDADERP GCDTEIGSPN GAMEAAGADG  600
AAGGAGDVAV GHVSDHAAAG PAGTSEPECR LCAAMVKMGR DKMVAAVQQL DSTAAQKLGA  660
MVLAYGTPRF EQLWHKLSFG QLQTMLSKSE LSVADRIELL KAVSFHTHAS EEDREKLESQ  720
KYVSQGLPPV VADFVAMVLD GKEGSTQMAE YFAALEVCKT LYGVTEDEYF NVSSTMASLF  780
MNM*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP551277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-15C3H family protein