PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0042s0082.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

SBP

Protein Properties

Length: 2763aa MW: 287586 Da PI: 6.4393

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0042s0082.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	79.2	6.1e-25	65	142	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq++gC adls +++y+rr++vCe+h +++vv + g+e rfC qCs fh l fD +r+Cr++L++ +rr +++ Vocar.0042s0082.1.p 65 RCQADGCMADLSGLRRYFRRYHVCETHIRSQVVHIGGREVRFCDQCSTFHPLAFFDGVRRTCRDKLEQNRMKRRARKQ 142 6*****************************************************************998766665443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.0E-24	62	127	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	23.059	63	140	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.14E-22	65	141	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.0E-25	66	139	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2763 aa Download sequence Send to blast
MDNDNPMRTL PSSEQPGAEQ PSDEHRSSSF QAQQQRHNQS IQEGDLRPSV MASATPVVQD 60 TGANRCQADG CMADLSGLRR YFRRYHVCET HIRSQVVHIG GREVRFCDQC STFHPLAFFD 120 GVRRTCRDKL EQNRMKRRAR KQQNANHAGA ITAAALAGAA AAASGNNNGG GGRSDDVDSD 180 DQPANGGGPA AAAGGDDAGP AVRAQGGHSL ARKRQSGTLA QGARRLQPSA RSVAAPDVTK 240 AVKVQRATTG QLGAARAEVW SPESADEEPD MQTPGPGDAG GGHHEDADWG AADMMTREAE 300 MGLGGALGAT LAAADGRDTG FGPAAATATA TAKRGRPWDP VGLAPDWPRV NHQDLRDQEQ 360 LQVAYGAVRD GAMYSPRGQL HGHLGQQGPQ VQVQVRAQTV KVQPLQLVPP LSQHQQQHQH 420 QQHQQHQQRL PMSEWEMETG GVIALERLPQ GAVQGTWRLH GGSAPNLPQE LPASSPKWAP 480 GGDARATWQS VPAIIVPASG TQDSHALPDK SMHDGGMRLA AVGGPTNNGG YQVHVRTPHA 540 ANGAGYPAPN TLGDPGCARD GRVGLPSRVA DQLITYKVDG EGAPAVTLLA QILRTEPEFR 600 QQLPRTSQAG PEPMSPPKIT LHNGGGSGSA DMLAGAAEGL TPAQQAALRL KLDAGLLASP 660 PNATTAAPQP QPPSSVSASA VPGPNMPKQW AQVQDDAPLQ QQRHHHQPLV RHELPGYGTS 720 RPGGQAATVW AGNGAAPQGS VWVTPDGTRF GAPLAAYPAP VGLGPQAVLI DRRISAGSSV 780 YTADEEAALA MEDVTSLQME AERAAIGTHN DALQQPIEEA PSLLDTPSFR DGIARDNADA 840 QMWEARRELQ KQQQQVQIVV SFPNHQNQRQ QLQGFDGEHR VTLLEHMQKQ EAFLEVVQQQ 900 QQEQHLGSQQ QHHSHMLEQH PRGQQHGLRQ NPANSLSHVD RWQQQQQHPQ QLEQQQPASR 960 VQVQLGSSAP PQNVFGKLCD EQRPVYLPSA FRMHVPEDLD ADSDYLQPQP QHAGIAAGAR 1020 ASGRGPVAAV GRPAPLGGIG GGGGQRPPSP APPQPHSWAG ASSGWRYSNG DSGGAPAMLE 1080 AQPQQQSASA IGYGTQQHMQ QLGDSLAGVA PSDQELILST LRKFAAHPPR AVKTAGGAHQ 1140 QQQQQPDSMG LSPSMPQGRG PQDRGGDSGS GGSSGCGGTL HMLRAEEGRA TQQQSYMQQQ 1200 QQRQPPPPQQ QPQQPAHNAA AGGEQLNLRR ESSYNDNING GPGSAEGLQQ VLASEGLQSM 1260 DSLAISEALL DGRGSLQLLD SVVFAQAQDA WVNTDTNPAA ASGADCGPAA MQGGPPTPPP 1320 HGSDGFTFGQ GGRVAGEGER WMGSTSDSQV HARSWQQQGA AAGEGFSGEE WVELPGGGPG 1380 MRVWERHQEQ QHRHVQQHER GPSHGGMFPA TERRPQHQQQ QQQQQGYRPQ SWNERHHHHH 1440 HQQQQQQQQE GLRDGCRPGH ALYTSPYDIN RPLFGGRVTA EGSGGGGGGQ TLSHVALKLS 1500 HARPDSLPME LVERMQEAAR GGGAAVLPAT LREGCVEVLV EVMHSCPTSQ LCNKLFGFPE 1560 ASGGASSALD LELDSALATA SGEQLRAWVG PHVFDSCERV TMQLLRGPVL DCKPGAPPKL 1620 RRWEAAMQDA GLGFAAHWPE VLMLCSGPPV LVADAVNAQQ IQLYGPAELA SPQGVVQLCV 1680 RMAGGAGSLG TVEAVAVDPE DGSSAPIPAD QASTAAPAAV AEGWLQPTTS TTSCWAAARR 1740 SPSPPVWPLA GPLSGLKAPV PGATSPALFR TVNASAGATN RLADLVAMAP RPTEQLKASP 1800 SLATGPCPFY CFAVEEVSEA EGPSSLGMSS RELCVRKGTP PAAGSAPGCT KGTVSETTEH 1860 PRSCFLTAPL PSSLPPSPPV AQQRQHRHQP GCLYNTIATA AATVARQPFS QLLLQQREQP 1920 RQQLQLCCRP PTFHCRSKSD DGCMTLCGSN DSGGRHAGSP SPRVPALASK GESLGRHSTP 1980 SAASHVCAGQ PYGGGGAPLV SVTSATTGLV HCLGPLSRRV SLCSSATLTT AMTLHDRLSC 2040 RSSATTAFTL GTTATLYDRL SLRSEWSWTS NMTSFGGMTA GAACGGGGIN DGGVGGAAPY 2100 SRTNEPQVSE PTYSVGASFG CTDQSLGPAH CARTARDDSK LEEENELMVS TPRRVAGPPA 2160 SCSSPRAVTA ASVAAQPYSS NSSDDASRSG GCCLRTGRLL DSAMVGLRPL RLQLPVLPCA 2220 GLALLEATGG HAVAASWPLL VVETVSQRNE LLALWRELAD AGREDVWREL AADLGLVLGN 2280 LPRRASVCDE PDPYLRSVPA AAAADRAFSS SALGSGEDFG FGGHGASAAV APLRWRSLGT 2340 PDRARDLLPG CYLNSGSLVS IESASQESWG TASATPRLAT AGQAVNTGPV SCMATLVHQR 2400 SSSSSDGDGS GSDVSRVGLP GSATSGASGD SGTSAVCVAD QHTGAGLVAA ATAAAGVGAV 2460 YLAAGAPARS RDGPDAATVD GSHAVRGAGA AAGAPVSAFS SHMATTSFGV GVVGVGGVEE 2520 AQEEGEGKGE QLQLPAVGRT CMLQRGDEVS LASGLAVIRG GCCDCDGEDD LHIASLTSFL 2580 GDLRMTAGRR ESSSDGRGRD DDAAARREGP GLGDGRRSNS SSQESASVLA AVESGTRAET 2640 GDVAVGKGEQ RKIGTAPKEV PGPPGLALPS PSPSLPVPPL AAVGLSAEAR LALQAAVSRV 2700 RRCIDARRLP ALWELLSRVA VDARTGGNTE EEESTSEVGG TAVLGPDEEA AAAVAAVAAA 2760 AV*

Sequence ? help Back to Top

Protein Sequence Length: 2763 aa Download sequence Send to blast

MDNDNPMRTL PSSEQPGAEQ PSDEHRSSSF QAQQQRHNQS IQEGDLRPSV MASATPVVQD  60
TGANRCQADG CMADLSGLRR YFRRYHVCET HIRSQVVHIG GREVRFCDQC STFHPLAFFD  120
GVRRTCRDKL EQNRMKRRAR KQQNANHAGA ITAAALAGAA AAASGNNNGG GGRSDDVDSD  180
DQPANGGGPA AAAGGDDAGP AVRAQGGHSL ARKRQSGTLA QGARRLQPSA RSVAAPDVTK  240
AVKVQRATTG QLGAARAEVW SPESADEEPD MQTPGPGDAG GGHHEDADWG AADMMTREAE  300
MGLGGALGAT LAAADGRDTG FGPAAATATA TAKRGRPWDP VGLAPDWPRV NHQDLRDQEQ  360
LQVAYGAVRD GAMYSPRGQL HGHLGQQGPQ VQVQVRAQTV KVQPLQLVPP LSQHQQQHQH  420
QQHQQHQQRL PMSEWEMETG GVIALERLPQ GAVQGTWRLH GGSAPNLPQE LPASSPKWAP  480
GGDARATWQS VPAIIVPASG TQDSHALPDK SMHDGGMRLA AVGGPTNNGG YQVHVRTPHA  540
ANGAGYPAPN TLGDPGCARD GRVGLPSRVA DQLITYKVDG EGAPAVTLLA QILRTEPEFR  600
QQLPRTSQAG PEPMSPPKIT LHNGGGSGSA DMLAGAAEGL TPAQQAALRL KLDAGLLASP  660
PNATTAAPQP QPPSSVSASA VPGPNMPKQW AQVQDDAPLQ QQRHHHQPLV RHELPGYGTS  720
RPGGQAATVW AGNGAAPQGS VWVTPDGTRF GAPLAAYPAP VGLGPQAVLI DRRISAGSSV  780
YTADEEAALA MEDVTSLQME AERAAIGTHN DALQQPIEEA PSLLDTPSFR DGIARDNADA  840
QMWEARRELQ KQQQQVQIVV SFPNHQNQRQ QLQGFDGEHR VTLLEHMQKQ EAFLEVVQQQ  900
QQEQHLGSQQ QHHSHMLEQH PRGQQHGLRQ NPANSLSHVD RWQQQQQHPQ QLEQQQPASR  960
VQVQLGSSAP PQNVFGKLCD EQRPVYLPSA FRMHVPEDLD ADSDYLQPQP QHAGIAAGAR  1020
ASGRGPVAAV GRPAPLGGIG GGGGQRPPSP APPQPHSWAG ASSGWRYSNG DSGGAPAMLE  1080
AQPQQQSASA IGYGTQQHMQ QLGDSLAGVA PSDQELILST LRKFAAHPPR AVKTAGGAHQ  1140
QQQQQPDSMG LSPSMPQGRG PQDRGGDSGS GGSSGCGGTL HMLRAEEGRA TQQQSYMQQQ  1200
QQRQPPPPQQ QPQQPAHNAA AGGEQLNLRR ESSYNDNING GPGSAEGLQQ VLASEGLQSM  1260
DSLAISEALL DGRGSLQLLD SVVFAQAQDA WVNTDTNPAA ASGADCGPAA MQGGPPTPPP  1320
HGSDGFTFGQ GGRVAGEGER WMGSTSDSQV HARSWQQQGA AAGEGFSGEE WVELPGGGPG  1380
MRVWERHQEQ QHRHVQQHER GPSHGGMFPA TERRPQHQQQ QQQQQGYRPQ SWNERHHHHH  1440
HQQQQQQQQE GLRDGCRPGH ALYTSPYDIN RPLFGGRVTA EGSGGGGGGQ TLSHVALKLS  1500
HARPDSLPME LVERMQEAAR GGGAAVLPAT LREGCVEVLV EVMHSCPTSQ LCNKLFGFPE  1560
ASGGASSALD LELDSALATA SGEQLRAWVG PHVFDSCERV TMQLLRGPVL DCKPGAPPKL  1620
RRWEAAMQDA GLGFAAHWPE VLMLCSGPPV LVADAVNAQQ IQLYGPAELA SPQGVVQLCV  1680
RMAGGAGSLG TVEAVAVDPE DGSSAPIPAD QASTAAPAAV AEGWLQPTTS TTSCWAAARR  1740
SPSPPVWPLA GPLSGLKAPV PGATSPALFR TVNASAGATN RLADLVAMAP RPTEQLKASP  1800
SLATGPCPFY CFAVEEVSEA EGPSSLGMSS RELCVRKGTP PAAGSAPGCT KGTVSETTEH  1860
PRSCFLTAPL PSSLPPSPPV AQQRQHRHQP GCLYNTIATA AATVARQPFS QLLLQQREQP  1920
RQQLQLCCRP PTFHCRSKSD DGCMTLCGSN DSGGRHAGSP SPRVPALASK GESLGRHSTP  1980
SAASHVCAGQ PYGGGGAPLV SVTSATTGLV HCLGPLSRRV SLCSSATLTT AMTLHDRLSC  2040
RSSATTAFTL GTTATLYDRL SLRSEWSWTS NMTSFGGMTA GAACGGGGIN DGGVGGAAPY  2100
SRTNEPQVSE PTYSVGASFG CTDQSLGPAH CARTARDDSK LEEENELMVS TPRRVAGPPA  2160
SCSSPRAVTA ASVAAQPYSS NSSDDASRSG GCCLRTGRLL DSAMVGLRPL RLQLPVLPCA  2220
GLALLEATGG HAVAASWPLL VVETVSQRNE LLALWRELAD AGREDVWREL AADLGLVLGN  2280
LPRRASVCDE PDPYLRSVPA AAAADRAFSS SALGSGEDFG FGGHGASAAV APLRWRSLGT  2340
PDRARDLLPG CYLNSGSLVS IESASQESWG TASATPRLAT AGQAVNTGPV SCMATLVHQR  2400
SSSSSDGDGS GSDVSRVGLP GSATSGASGD SGTSAVCVAD QHTGAGLVAA ATAAAGVGAV  2460
YLAAGAPARS RDGPDAATVD GSHAVRGAGA AAGAPVSAFS SHMATTSFGV GVVGVGGVEE  2520
AQEEGEGKGE QLQLPAVGRT CMLQRGDEVS LASGLAVIRG GCCDCDGEDD LHIASLTSFL  2580
GDLRMTAGRR ESSSDGRGRD DDAAARREGP GLGDGRRSNS SSQESASVLA AVESGTRAET  2640
GDVAVGKGEQ RKIGTAPKEV PGPPGLALPS PSPSLPVPPL AAVGLSAEAR LALQAAVSRV  2700
RRCIDARRLP ALWELLSRVA VDARTGGNTE EEESTSEVGG TAVLGPDEEA AAAVAAVAAA  2760
AV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-14	61	138	6	83	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002952986.1	0.0	hypothetical protein VOLCADRAFT_93794
TrEMBL	D8U329	0.0	D8U329_VOLCA; Uncharacterized protein
STRING	XP_002952986.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27360.4	1e-17	squamosa promoter-like 11

Link Out ? help Back to Top
Phytozome	Vocar.0042s0082.1.p