PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0028s0042.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C2H2
Protein Properties Length: 466aa    MW: 47711.3 Da    PI: 5.29
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0028s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002982102121
                          EEETTTTEEESSHHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                          ++C+ C+  F+++ ++++H+ 
  Vocar.0028s0042.1.p  82 FRCELCNANFPSQAQYQQHLA 102
                          89*****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.59E-872113No hitNo description
SMARTSM004511.6E-479113IPR003604Zinc finger, U1-type
PROSITE profilePS501578.70482106IPR007087Zinc finger, C2H2
SMARTSM003550.009282106IPR015880Zinc finger, C2H2-like
PfamPF128743.7E-882106No hitNo description
PROSITE patternPS00028084106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDKKHTSLSA QAAQLQRSIQ SREQRRIAEK AQRYEAAEAA GEYGAYDAPP AKRVASGNAG  60
RSAAVAKLSE ISALASQPTE LFRCELCNAN FPSQAQYQQH LAGPVHRKAL DKLAEQQLAA  120
QRRAVYQDMT DSALGAAAWS SAHGGGAGGG GGFGGGRQQH PAGAYPPSAA GAAGAVNSFA  180
GGHGAVSAGR MPGGGRGVGE PRSTPAAAGR GSKGSGHPAC AAPRRHDVMS HEEVVAAATR  240
SDEPLTIGGW APPAITLPSP APKPVTTPTG ALRTTDLSGS LNRQHHHKHQ QQRNEQQCDN  300
DKEEGRREQE DQHDGQQQQQ QQQQQQHQQH LEAQNGSLPK EAAREGTDYG SSGGGGTGGG  360
LLGLVYDSGD DDDDDDDEGC VDANEDAGVR QEGKGSLGSM AAATAAGGSA RPTGAAAEGT  420
EAEGKDGAGG GTTSMHEYVS SDDCDSDVES GDGDLQGPSF TGPFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002957805.10.0hypothetical protein VOLCADRAFT_107821
TrEMBLD8UGP00.0D8UGP0_VOLCA; Uncharacterized protein
STRINGXP_002957805.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1037722