PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0028s0029.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C3H
Protein Properties Length: 795aa    MW: 84066.2 Da    PI: 8.8272
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0028s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13e-08625525
                         --SGGGGTS--TTTTT-SS-S CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                         +C +f+r G+C+yG++C+F H
  Vocar.0028s0029.1.p  6 ICIHFQR-GFCSYGSNCRFLH 25
                         6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.521128IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-4327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-6626IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-6625IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.60.10.101.6E-695208IPR005135Endonuclease/exonuclease/phosphatase
SuperFamilySSF562194.97E-1998209IPR005135Endonuclease/exonuclease/phosphatase
PfamPF033729.6E-7105204IPR005135Endonuclease/exonuclease/phosphatase
SuperFamilySSF562194.97E-19334373IPR005135Endonuclease/exonuclease/phosphatase
Gene3DG3DSA:3.60.10.101.6E-6335391IPR005135Endonuclease/exonuclease/phosphatase
SuperFamilySSF562194.97E-19427480IPR005135Endonuclease/exonuclease/phosphatase
Gene3DG3DSA:3.60.10.101.6E-6433447IPR005135Endonuclease/exonuclease/phosphatase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MQPPGICIHF QRGFCSYGSN CRFLHQQLGA FTSGGGRFSG ARWTEMQDGG GRGSGQYTYY  60
QERHLHVSAS AFVRAQRPAP TREWSAPLND ADSDNQRPSF NFRFMSWNIL ADELAQSHAA  120
ELYPQAHHTC LDWSRRLAAV VSHVETHRPD VLCLQEVDDW PRLRQALGAV GYDGVHLQRT  180
GGRGDGCATM WLRGRLRLAR TRSGSGGTGS GVHRVRMADH GLKDNVALLV HLQPRLGGAV  240
AGGGGGGGSS CNSSSGSGSD VTSDSGDGSE GGMGWAQLPP QERLTGRRPK RTERTAAAAA  300
AVSGLESAAS APALLQTQPK APLLPSQQQQ REREPGSGHA GLRLPRHLRR GFWVANTHVL  360
FNTKRGDIKL GQLRVILSEL AARAIQQEED GAGEKGGMGA AEATRAPGMQ DGCPTPGAAA  420
GTAARPAEGP AAMPVLFAGD FNAAPGSGLY RFLRYGAVRL AEEDRRELSG QVEGYGYTQL  480
QQDARAGRAL MLTRWGPGPE LRDQHNASGP GAATTTTTTT TTTITTTATI TAASSTQAWR  540
QMRQGRQQSA GWQQPVAPDR RSYSVRWDEE ELVHAMGRAA VLQAVAALQG NGEAARSGCE  600
GEATAAAGAR GRVPPPSGGD YRSSSGNLFR SASGGYGQRR GGGWDALCRD QWHAVTEAAV  660
VRHPLQLRSA YAAVDEQERE PIFTTLHARY VGTVDFVWYT PGDPDFGGAA ARGEAEAPGA  720
PGVGGSAGGA AASSSGNGRI DANAFSGHGT GTRGFSLKPV RVLQPPDPLS YPYGMPCTDW  780
PSDHVSLAVD FRLT*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002957800.10.0hypothetical protein VOLCADRAFT_98932
TrEMBLD8UGM90.0D8UGM9_VOLCA; Uncharacterized protein
STRINGXP_002957800.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP88233