PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0024s0255.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C3H
Protein Properties Length: 1328aa    MW: 135541 Da    PI: 8.9626
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0024s0255.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-0712141235526
                           --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                           lC++f   G C+ G++C+F H+
  Vocar.0024s0255.1.p 1214 LCMYFNTPGGCRNGESCRFLHV 1235
                           9********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.930.109.0E-16372468IPR017923Transcription factor IIS, N-terminal
SuperFamilySSF476761.96E-15373467IPR017923Transcription factor IIS, N-terminal
SMARTSM005097.5E-7383456IPR003617Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
PROSITE profilePS5131914.832385457IPR017923Transcription factor IIS, N-terminal
CDDcd001834.47E-10400455No hitNo description
PfamPF087113.2E-10404454IPR017923Transcription factor IIS, N-terminal
PROSITE profilePS5010313.18812091237IPR000571Zinc finger, CCCH-type
SMARTSM003560.001512091236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-512131234IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-512141235IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1328 aa     Download sequence    Send to blast
MATVPRSQSR VVRAPLERHK GTPAHLDGAS CAQDPVDGDK DEASQLQPRA PDTSAVEHAL  60
DWPTGWNPHQ EYLVSGSALL AATPQSSLDP ADLFMAREPQ LPAASVLPAS DPSCNSGVCA  120
LLNCGSGSIA QLPTSQETTD IVLGGNCTGR RKRLAAEMQF EGDGGHGACG TGPGGCTGDL  180
GLRPSGSCHN CQGSEERPCV DTARGGPGSS GTPNNVHGSG SGAADMDVAD GAQHHEREVF  240
GSEGTPAAVA VDAAAAEPSR SPPDAGGGSG GTAPCGDTTA TSAAASSYAA LAQQPSTTAP  300
KSGCGGPSAS APEAGSTAVM DTLAKELGPI MARCGGVSDT RHAGRLAALV EGEERLGGRL  360
TLLTVVQQST QDVLRLFVQG TGLRSLERWV IQFRDEGRHP ALVKVISCLK MLPIDLIALK  420
GSSIGQTVGK LRKHTNQAVR AAAAELVDQW KSVVDRSVGK GEARQGGKSK ADGFAQEGPN  480
KRPRKQADQS GATAAAAAGP GSSGKQQPSG PGSDGAATSN STAASSSKLA VMDDDLFVSA  540
AAAGGSGSGG SSSHPPGQHR SLGLTSFITG AKKVHAMKLE NVVPSRLGSM GAAQSTATAA  600
GAAAPAGMSG TSEAAAEDGS GAPHSPTSPR GDGAAAGLEA AGVDGAPGPG SPKPGGDGAA  660
APGGSSTPSL VPLAGGEGPS ATAGPAAGAG SAVPKAMTLP RLGTLAGPSN PTVRLGSLRD  720
GSLPTSGIAR LGAAAGVGAG GVGGRAGTAA SLPAAVAPGG PQSAHARAMA ARARAPSPEP  780
APRREKKKTV SWAGDDGLAS YRLFKKDDPP QAAKSDAVLT AEDEAAATAG EGAAGSFGGP  840
GSSGGPGGLP PPPGFQSAAR REHASERMAL IAQHQQEEQE RQQELKSRTA NEDNRLRPSD  900
DARPFKPKCC EPKRQTSSDH FLYVEGFLSN LERWAAMRPT VPWVEPPELY LGAVLPQQLP  960
ALGEDSTERE VQVRLRQHTP RVVYYSPSQI PPSPAEPPPE PEPDLYRVRH IPLNVPSGPQ  1020
MPRGGGPGPG AQPPLPHLQP PGMYGGGPPG QPPHPGVALP LPYGGQLPPG QLPAPLIPGG  1080
PPPPPPPQQQ QQQPPLAQGA QPGLQQGPPA QLTLPPDLRS SVRWPSSLLA YPMEVRRRNS  1140
RNKGDLGLAR VRQDRGRRAS RGRSRRACCC RRTSTSTRMG YRTRTRAGPT ADLDRRSRRG  1200
HNPASRRQAD RWTLCMYFNT PGGCRNGESC RFLHVHSQDM GPPYDNGPYS GPGRSGMGMG  1260
RPGGGPPPAP VGARRVARFW LERSGNLWTL ADCLRTIWLR VPCFARVVEA TAHVEGISTQ  1320
VAKGAAS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002953870.10.0hypothetical protein VOLCADRAFT_118487
TrEMBLD8U5D20.0D8U5D2_VOLCA; Uncharacterized protein
STRINGXP_002953870.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP481033