PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0024s0026.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family GATA
Protein Properties Length: 577aa    MW: 60542.4 Da    PI: 4.5888
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0024s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-19529560132
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                          C+ Cgt kTp+WRrgp g++tLCnaCG++++k
  Vocar.0024s0026.1.p 529 CVDCGTDKTPQWRRGPKGPRTLCNACGVRFKK 560
                          *******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.244523559IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-15523574IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-12526561No hitNo description
Gene3DG3DSA:3.30.50.106.7E-16527560IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.56E-15528576No hitNo description
PfamPF003202.0E-17529560IPR000679Zinc finger, GATA-type
PROSITE patternPS003440529554IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MEWLYRAESW PLPLYEQKFI HADMEDDCYM AGEEVVGGCF PPRSCQALGD VHANDSSRGA  60
ESSRCKGTSI ETLILRFQAD KAKYLLPCYD GDDERGIWPI APAEATSTKV AQRFDKYYQA  120
SVQRALKGYF LPSPFGLPAH QSNVIGTKDA KPRPIGDGVR ACNEECFPQN SCGCDKSRLL  180
SDVLLANDVP AAPAPPSEST GLSEADAMAL PDRASTSVPT QIEADAISLP LTVMTAAAQS  240
SVAQSSVGRP GEFASRGMTE DTEDEDGGAD ISAAAAADED GATNSATADV AATVLPVKRE  300
SSGCYPMLAP AMAMTTAAAA ITSWLAQSHS AVTAMVEDEA SEALEAEGGA QLELSMQGSQ  360
RTWTVSLLPA AAAVDCTPPP SPEPSSLPPG HGVLGTTSTS ARTVGGDLEG RPRGCVVEAL  420
PAEGSRRPRG LGRGRPSVSA AAAGSIQLEP PPCKRARRTA AAVLRTVIEE QTTDEEVDGE  480
MEEEQYSEAA AEEVDDEEFV VRATGGTKRS RTGPSQGRTG GRLVSGSVCV DCGTDKTPQW  540
RRGPKGPRTL CNACGVRFKK IQDGQALRGA SGRARR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002945690.10.0hypothetical protein VOLCADRAFT_85916
TrEMBLD8THC20.0D8THC2_VOLCA; Uncharacterized protein
STRINGXP_002945690.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2201430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-12GATA transcription factor 12