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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Vocar.0022s0201.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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| Family | C3H | ||||||||
| Protein Properties | Length: 4770aa MW: 506988 Da PI: 7.6786 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 26.4 | 1.2e-08 | 33 | 58 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt++Cr f + G+C+yGd+C+F H+
Vocar.0022s0201.1.p 33 FKTKPCRWFTQLGHCRYGDKCNFLHV 58
69***********************6 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:4.10.1000.10 | 2.3E-10 | 28 | 57 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.75E-6 | 31 | 57 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17.046 | 32 | 60 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.2E-7 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.3E-6 | 33 | 58 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:1.25.40.20 | 9.9E-40 | 243 | 295 | IPR020683 | Ankyrin repeat-containing domain |
| Gene3D | G3DSA:1.25.40.20 | 9.9E-40 | 724 | 926 | IPR020683 | Ankyrin repeat-containing domain |
| SMART | SM00248 | 470 | 728 | 756 | IPR002110 | Ankyrin repeat |
| SuperFamily | SSF48403 | 1.17E-32 | 730 | 923 | IPR020683 | Ankyrin repeat-containing domain |
| SMART | SM00248 | 1900 | 760 | 791 | IPR002110 | Ankyrin repeat |
| CDD | cd00204 | 9.67E-16 | 764 | 913 | No hit | No description |
| Pfam | PF12796 | 4.8E-7 | 765 | 866 | IPR020683 | Ankyrin repeat-containing domain |
| PROSITE profile | PS50297 | 14.796 | 804 | 924 | IPR020683 | Ankyrin repeat-containing domain |
| SMART | SM00248 | 0.77 | 804 | 833 | IPR002110 | Ankyrin repeat |
| PROSITE profile | PS50088 | 9.137 | 804 | 829 | IPR002110 | Ankyrin repeat |
| SMART | SM00248 | 0.12 | 840 | 869 | IPR002110 | Ankyrin repeat |
| PROSITE profile | PS50088 | 9.084 | 892 | 924 | IPR002110 | Ankyrin repeat |
| SMART | SM00248 | 0.14 | 892 | 921 | IPR002110 | Ankyrin repeat |
| Gene3D | G3DSA:1.25.40.20 | 9.9E-40 | 1007 | 1028 | IPR020683 | Ankyrin repeat-containing domain |
| SuperFamily | SSF48403 | 1.17E-32 | 1170 | 1251 | IPR020683 | Ankyrin repeat-containing domain |
| Gene3D | G3DSA:1.25.40.20 | 9.9E-40 | 1172 | 1312 | IPR020683 | Ankyrin repeat-containing domain |
| SMART | SM00248 | 0.022 | 1179 | 1208 | IPR002110 | Ankyrin repeat |
| PROSITE profile | PS50297 | 19.359 | 1179 | 1279 | IPR020683 | Ankyrin repeat-containing domain |
| PROSITE profile | PS50088 | 11.487 | 1179 | 1211 | IPR002110 | Ankyrin repeat |
| CDD | cd00204 | 3.89E-11 | 1179 | 1252 | No hit | No description |
| SMART | SM00248 | 270 | 1212 | 1243 | IPR002110 | Ankyrin repeat |
| SuperFamily | SSF52540 | 2.4E-34 | 1795 | 1917 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 4.2E-10 | 1799 | 1914 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SuperFamily | SSF52540 | 2.4E-34 | 2124 | 2228 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 4.2E-10 | 2146 | 2224 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SuperFamily | SSF52540 | 2.4E-34 | 2277 | 2406 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 4.2E-10 | 2280 | 2288 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 3.8E-12 | 2289 | 2407 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF13361 | 3.6E-7 | 2373 | 2480 | IPR014017 | UvrD-like DNA helicase, C-terminal |
| SuperFamily | SSF52540 | 2.4E-34 | 2460 | 2484 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 3.8E-12 | 2461 | 2484 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| GO:0005524 | Molecular Function | ATP binding | ||||
| GO:0016787 | Molecular Function | hydrolase activity | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 4770 aa Download sequence Send to blast |
MTSRGLKHKS VPCELPPARS VEAAEPSTSN QAFKTKPCRW FTQLGHCRYG DKCNFLHVSL 60 GTSAILSTPA AKTATIATPP AVPSPLQQQQ PPDMAVQSAA SPLPRPPPKP AASAVQAAAT 120 ACPKSLVRAA CGAVRHQNFG ELRPALEQLK TCGQPLTRSQ AAELVECAAV EVLNAPMLKN 180 IVRLLESPGQ CLGDWTLLRW QPAATDNVVY NSLLHEVVLR TYSCTEESED SDEAQEMLER 240 GLAVVRLICE RRPAAVVDFQ SRLAGVTPVE ALLDKGNTEM DEWLEELLKA VAPLNWVLTK 300 PGWAGQRRAL AICDQLVAQP AVAEALGIDP EGWVIRGSLL QAMLDEHLND PVSLVMMENP 360 ERMPRPAASR FIVLPRADVL HDKAPVPVTA AAAKAASTVS PKGNSHIKPA PVAPGAAAAA 420 TAPPPPPGRT GAPHAVTSGS RARAAPEPLQ TTGPVTPQLA QLPPSSGMMI FKGIFSNEAA 480 QGKARAPPAA VPAAPAMRAA AAAAPTHVSR TPHLQQLQNS IMTVRNALGH LDAAVMLRGD 540 IAAIERAVQH LRTATAKEAM TPKALMDHLA KEWRQGDAKS KGSDKAAALV MLLKSAAGSQ 600 CDAEVQLLGA VVSTLRKCAW HAATELHNLD MLAMLATVEL PGWMKWSWET LASNDKPPVP 660 LLQRLLEQGS EAAWAVVKAA HGRNQSIVRL TSTSPVILAL KGNAPRQLVI QLAASCVKFR 720 KDRTEADDEA TALGWAMRQG RMDLLRELLP LIDPRLPAEG DMPPLHHAAE IGDDTAAAVL 780 LDPCGKWWMA HGLTVQELLA QPHEGQTPLY RAVAGRHVGL VRQLVAAGAA PLEPVSADGY 840 KDTPVHLAVY MKQVDILRLL LENCKVATRP DCFGSAAVDE SQAQLNRAVD GERQTALMLA 900 QRERHIECVG LLLEAGANPT LLRDTASGGG GGKGGKKGGM GGGGAGGSRL MMQNARLRGL 960 LAAKGGVVDG TEGASGKVGA AGGADGTVMP APASSSSSSS TFPESVLSRA LEDGVEDVLR 1020 VILECWRPCF NGSALKPELG PAACNRVRAW LKEHARVTLW PTVKALTDLA DASPSGVASP 1080 SWLSAPLLEL LLELCNEASG RDWRACDGAS WQGPDGTGPL PRLVVWGVMS GAVVGTAPPP 1140 GPVPTFVTPA LLKELLRHGV ASLTERVPAG ATRPRQLQEG SSLLHLVCFT GDVAMLEVLL 1200 AAGADIGCMD DLGNTPIHVA AACPHREEVA EQLLRALSAG TAQTKEGQGP RHEQQQQGKE 1260 HALAMDLATA EAAVAAGEAR LQALTGRNKN GLRPQDMATS RKVKKLLQQL QETAGGALQS 1320 ALKALQERQG PRDATSDAAK EVVSKAATKK GNADDNKRRK GDGGGSKGVS KSGIAATGVG 1380 DGPRVIRSAA DLADDEALRS AALAQLVAVP EPLVLPLASK LVKLLPANLA RGGPHAGAGS 1440 DGGAAAAADT DAANAATNRE LQRIVAEMRV NCGEEDGDEG VEGDDAAAYS DDDAPPPGEA 1500 LVDDEVLLQL PARGASGLSV ATATATASTE ASTTSAPATA ASAVDGESGE HPLRGLAWRF 1560 VITRQAYEAW GRLPDVWRRL VMSRLRVIGS GYWARCRGAK KITADDPTLA QQELWRLKVT 1620 KGGRILFEVA VEYDEESRTW AEMIRLWFIT LSHKAYEDMI GLVQASFRRT LAMRERLRLQ 1680 PIPQHEAPMP SPLPGGRTAT ASAAAAAGRT AQRLPRHYRE AGKTTDGEAA AANSGGGKTR 1740 GSRKTQQQMP PAGDLREHFP PASWAVDTYT LMKFYNLDSF LVAAVLQGLE TAKVDFPFKL 1800 SPEEYDLITL APNPPSSIIL LGRSGTGKTT CAVYRLWANW LRHYTNPGLD PVHAVFVTAS 1860 ATLRERVALA FRRLQSAVMA PAEFARVVAV ANATYHTFHD VPSDAFPLFL SSRAFLRILD 1920 GSTGRPFFPR QPNGAILQLP DDGEELDPDG AALVVALDED VSDDEDEVET ETAAGNQGAG 1980 DGGAAGPDSA SGNAEDTAAG GVVALEEEME AAAAAAAAVA ARAAALADLE AGGGDGHAAS 2040 DSYGLGVAGR ARLNREVTYQ YFVNSMWKKI TTPDQRDSVA PGLVYQEILS YLKGSAEAIA 2100 SPAGHLSLPA YLALGRKRAP NFSEEIRKDL VWPIFEKYER LKRHEWRYDL LDLVGHVYRE 2160 MSVSGYTGTP IHALYRDEVQ DFTQGELLLD LAVAADPNTL FYCGDTAQTI ARGIGFRFTD 2220 ICTLFYEENQ RRQQQQLQQQ MAAAAAAAAA AEDASGEGRR KGALMARRGH GVTVATPPIH 2280 QLTMNYRTHQ GVLDVAALVV DVLRRYFPRQ LDRLERERAL FPGPHPLLLG GISSDDLAIL 2340 LSGSDRNTSQ VEFGAHQVIL VRTMASVAQL PQDIQDSNAI IMTVPQAKGL EFDDVFIVDF 2400 FNDSDANSEW RVLSSYLAEL AGTGGVGAGD GYQYDMQQVT PPDAGAVRPL AFDERSHVLL 2460 AEELKHLYTA LTRAKNNVVI FDRNPTKRAP FYHLLQSLGI ARTVHRSLLE DGRDAVRYGL 2520 TQQATSSRAE WAKRARNLLD NRNYLMAKKA FVQAADMVRT EVAEAYLKRR RAADEESPTE 2580 QRRLLAGAAL QLLAAASRRE QSPDPVTAGE LRRWLGLAGR CLQACGLAGP AAELAFKAGN 2640 HTAALRVLLA GKEHAAAAEC CLDAAAEALR QHAVYQRQHL AEGGSAAAVV ALLESLVVPP 2700 AGTAVAAAAA ARKRALAWLA KAVEQVYLAN DLETLTALLA PAGANASGAN DSEDDELGIK 2760 DDGRGAAAAS TGAPTDVFAM LVPELHDMLR RRWVSSYGRA LQRVALRCHA RGEHGRARRM 2820 VRLMPVEAER DALLARMGDW REQARLKRSS DPLGAAQLLL DNGDFERAAR LVSDYIASKA 2880 PAPQQPQAKL NSVPGGAGGR IVAARGVAAV GVDAVATAWA PVEERAWDLV YRCIMAQTDA 2940 AGARRLRREL DRWAVAAAGT PEAALGSAVS SSPSAGQAGR RVLLYRGHAV LLEARLLLQP 3000 WVSAGGVSGA GGVGVGTRNH PQQSVPASWE QLNDEAVAAW EAAAPLLREA ADCFSRCEFW 3060 PGHLEALTLM LMFGPESDAA DAAVATAAAA AAITSATSVP GSASDSPRLR QADGAAAFVR 3120 TVQAVVEAFH ASGPWGLTKL QGQHLVALEQ LYGLPGLSRW DERLPAKQAT HVWWAVLGPD 3180 SAAAARAAAT AASAGSASLA PRQAVEAVAS AAAQRAIKGL SYAAAAAKGV QTTAPPPQVA 3240 AAAAAVPPLA TTRQLLTHQL GIAARQAVPP DAAGTMQRSA VVAELVRDLA VKAACVSFQA 3300 LRSAIDTYLA IPSETTLPPA TSKMVLAALR PVVRSIRVSR AALALLNAAE ADFGLYPDAL 3360 VRSLRMQTRR AFAVFAAAPL APSQVTTYQE DLLQPPLFYG GPSPPPHGEL LKLLLSESLQ 3420 KMDLHEWIKE AIVFSDALNG RLALAPTVSY TAWRTTMLVL MHDELAGRVF KLRRARLPPD 3480 VPASRMIRDR ENTALPEYVL HQAFLHFSTN LPHKAIGDLL YYLAWCCRRD GLLVLSWAAS 3540 STAAAAGAVA ATGGAAVPAS AGLLTINAAQ GSSGAPSAPV SSAAGGSARG RCLALEAYVE 3600 LTELAVGQLL LAACDNAFLS GNIAGKLAGL PKHRDHRLSE LALRWLWALG FRPPTRPSVA 3660 PGLQRGLGNT TQEYFRYAKV AQEALGKQLL LCARLVMVLA GHLGRLLVVA EQGEGQGTGG 3720 GGFGAGGTAN AVVMEELLPL LEAPSIAAAL ELMGIKGNHG GEHCASVAIP SPVGATPSAR 3780 GPRLIALARR ILLAAGSAWL SLEVQKRMPQ QQLPQQQHSA AAVAAELQDA AATRGRWPTD 3840 VVPLFREAVG LLAEPLVGAA AIRVLCSDLT LSGLADQLRQ LAAAWNGHYY GSMLLVDARA 3900 DREFEGFGPQ HQAKQFKGLQ GPLAALYTVV QARVQGPSAM QQERAVLTGA KQAPAQAADV 3960 PVIAGLLRSA AEAVGVVASK DYRSTRDELT KQSAAAAIIQ RSWRQWRRRR EEAAAAAQQR 4020 QREEAALRQL REGMSFGLRI ALRVYLSRLR RSIEKRKQQE AQGNGQDGQW DEFGFAAVEA 4080 SVQEGEKRRF IDESSCPVCQ PKSIPQEQQQ QQLWKEEQEQ QSQQQSLAVE DRAACGSSGS 4140 KLNLSLTAAV AEFLPHKSRT EHQTALHFFR LCHAKYRETV SGLVRHAQSL LKYMEQVQGQ 4200 LKADPEGSNF LVIVMESSMQ LDTALKELCD QLHKIVAERL WMTSPQLLGP KWYACMNACD 4260 IAASQLNLYT TAYRREVVQQ FAQGDAQQQE VARQETHGTF AASQGPAHQQ AKEADVAPHV 4320 GAWQEAGPRQ GQQAGCTSNV GMEAEHQYTR SHHGHQLQYQ QPAPPVPHEL LNRLKFQEGS 4380 NVWQGDETQQ QLAAPHRYPH KEPSVAPSYQ SQLHGQVITA HMRQQQEYPM MQPQPLQPQL 4440 HHALQQQLQQ QLQSYQVVQQ QQQRQQLQQG QPYGSSLNAW AAGPPAPAAP QFSQRMPPQQ 4500 QRMAAGAGAW GVRQMPGVSV WGGIAGARPQ LPNVQAHGAA QQAYAARGPA AAAPAPTWAS 4560 MSSTPMLQLM AQQNQQQHHM LQAPYAFVAA STAPCRNADL SPGLIPGGGG SAAAATGAMP 4620 YMHIMGGGGA AAAATAAGSG LRTDDELLFP GGPGGDGDGY DDGMEAMMDG DDLDDHDWMQ 4680 GNPQARRRNN RYKNVGGGRS IGAGGRVGAM GAPAVTSSTS AAGPVLPSAP GARAHHQQVP 4740 TALRGNMYAP LMFANATPPR QAHGKKGRR* |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002952370.1 | 0.0 | hypothetical protein VOLCADRAFT_118102 | ||||
| TrEMBL | D8U185 | 0.0 | D8U185_VOLCA; Uncharacterized protein | ||||
| STRING | XP_002952370.1 | 0.0 | (Volvox carteri) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Chlorophytae | OGCP5540 | 2 | 2 |
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Vocar.0022s0201.1.p |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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