PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0022s0152.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family ERF
Protein Properties Length: 672aa    MW: 66073.9 Da    PI: 6.5114
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0022s0152.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16e-20417467155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +g+++AeIrdp     +  r++lg+++taeeAa a+++a+++++g
  Vocar.0022s0152.1.p 417 CKYRGVRQRP-WGKFAAEIRDPH----KgVRVWLGTYDTAEEAALAYDKAAREIRG 467
                          79********.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-13417467IPR001471AP2/ERF domain
CDDcd000184.64E-32417477No hitNo description
SMARTSM003801.6E-39418481IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-22418475IPR016177DNA-binding domain
PROSITE profilePS5103223.644418475IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-31418476IPR001471AP2/ERF domain
PRINTSPR003672.9E-10419430IPR001471AP2/ERF domain
PRINTSPR003672.9E-10441457IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MKVLTDMMLD AKAKHSLLSL DAASLGLSLP GASPPAIGSA SSRPPGPGAS LGSNAVAFGS  60
GQFNSITLFG GLPFGGTGVL PTGIPPLTAA AAAAAAAVAA QAAVTGQVAA LPATANERTL  120
LKQPGVVYPA GGIAASVPPP PDPSLAVPTP PLTTSPPVEP SDGSSPSTSH NSHDAAAAGS  180
PPAPSGAGSL DRTAALTAGL LSSNGTAPHM GVALPPMGPV GAIAAAAQAA SVSAMGAPSL  240
WLHQAVLTSG AQAAARPAVL ALLPPHQASV AGAIRRSNDG QMSAADEPHV AAQGPAAGLP  300
GAGAAALGDA PVNATPSGKP PLAPGGPGPL PLSLTDHPAA GIGCSISYKS NGSHTGGFTG  360
GMPLGVSPPS LGTSPAAGRL SSRRRTSSTN LLSSSAGAKA SSSAPSLSVK PDKSGACKYR  420
GVRQRPWGKF AAEIRDPHKG VRVWLGTYDT AEEAALAYDK AAREIRGPRA VVNFPNVNPG  480
AIAHQDDECA HWDPLGSSSL GTSPVSSGFA TGTPPLMGGS APVRNIGHPQ HQHNHHPGVA  540
PYTNLGPRST FGGFPVYKRD PETIVEGDSD VDMDDGDDGD GMEEDREDGG SGGRARLNVV  600
TGVGGSGRPS RPAAAAAVAA VTAAAVRGGI ELEDNGVELA PARVKRPPVA FDVEDELAEL  660
ADALLLLHES A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-24419480669ATERF1
3gcc_A3e-24419480669ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002952426.10.0hypothetical protein VOLCADRAFT_105483
TrEMBLD8U1480.0D8U148_VOLCA; Uncharacterized protein
STRINGXP_002952426.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-18ERF family protein