PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0022s0024.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

SBP

Protein Properties

Length: 2042aa MW: 204622 Da PI: 7.1807

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0022s0024.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	76.1	5.6e-24	41	109	1	69
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakh 69 +Cq++gC++dls+ak y++rh +C +h kap+v ++g++ r+CqqC++f +l+ f + rsC+ L++ Vocar.0022s0024.1.p 41 ACQAPGCTVDLSDAKPYFKRHSICATHMKAPQVWINGEKMRYCQQCGHFENLDMFIGANRSCKMSLDRR 109 5*************************************************************9999864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.2E-25	36	103	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	19.572	39	116	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.32E-22	41	110	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.1E-23	42	111	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	3.1E-4	1255	1377	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2042 aa Download sequence Send to blast
MSASGFAHAQ WQAGPLEWNT VIMEAYDTRG AGKRRKARTS ACQAPGCTVD LSDAKPYFKR 60 HSICATHMKA PQVWINGEKM RYCQQCGHFE NLDMFIGANR SCKMSLDRRS AIAHASKRKE 120 LRSAKSRDQE GNQELSASDN TSSDKGERSG WKDLDSTWGS PEEMMRTESS RRNVLDPCLH 180 EADRPCPARD VDMALDSSHP QGSGGRLLSD RTAPFRNASN SNGLNVLPVL NDNGASSDNN 240 GHNNFNYQYS GSNPQVNGNN VVHLEPPSRC CPDVVMRDGG DDGGGGGGRG GSPEEGSSGH 300 MNFPWMRSLQ QHQQHHLQPG GPGAAGLPGL PSRTLIAFPS LHGGKPAAAA ATPHLTWDQQ 360 RQQRPEVLTA PLPAAAVTSS MYGGGIAAVA ASAASGNVTL NNATTGRLLA GASAPPQIFS 420 AAPPSVVVAL DPAELPGIHD PALERQLQDI VTSARLEGLG WYGRPPGSGT NMSPYLPTGN 480 EGASGFADVA GPPSQQAHYS LARGAPGPAG FDGSGGGGGG RHACTGSAAI GGGGSHQVRG 540 RGVAGAACTA AANGTAAAAA APSAPEPSLA TALWYHRQAA DDVGDVGGTA GGWVQPKSKP 600 GGQNGAASGS SGSSLETCMH YLSQQPPQQQ VPQHSYGYEY GDVGAGGSYG GGAASPATHG 660 PGSAGGRGHR AVGLGRGGAL RGLLGYRSGE PDQLVRMALK LTSRAPHELE PSTIASLRRM 720 LSVYDKLQSV QGYVRPGCTE LIVDAHRPGS TATERMMRIA AAAAAAGAGG GGGDGGDGGG 780 NNNNNAYTSG GAASDAAAAS SSSGNSSLST ATGGGLGCRF SLGGDALTTV SSSGGGGGGG 840 AVSAGSPSSS SWWYESDSGS CQGIRTTALA EAGLAVLKER LRPLPLDGEA AAAAAAAAVE 900 GRVEGGVRGR LGGLRALTLS RVLLERRSCE GGVVGAEAVL RSPDVLAALR DIATVNDTAL 960 TCQLGDMAVR VSEEGDVGDV QKLLALPTIV AASCAAISAD KPVTEVLVYG TNLERFGMAF 1020 WARMHGVCYQ LQFRTSRGGA VMLQLPALPQ VGLLQLEAVS PGGGAVGPSY PLLVLPSAGA 1080 VEEVHALARL MGPASLRRFI ADFGFVLGVG ALLSLPLNGI TPVKSGPSMS LGLGPESVSA 1140 SDSTSSAFNS AVNVDVQPGG GGTWGSTESA DVSCGNTGDA PAEETNSSSG QPAVAMAASQ 1200 ATAMAAAMAA AAAPLVMPMR RRGVLSRGGS RTSSRNTSPE NSGTRGLFSE RNDPTDAMTN 1260 ADDEQVVELL LSAGAVRSLL DTSVTLLHTL VERRMQHCIA LLVDRLSELG ERFPDRVHGG 1320 LAPPLAPGPA FVLMHAAARV GDLRLLMPLL ALEGLLGEHC SLTARGVNGV TPLHLIALLP 1380 QAPLLVRSLQ RLQPGLEQAL GTLEADDGVT PSQLFHMMHV AATTNDCAPT TATAGGGGGD 1440 GGGGGGGGGA SSSPPHQRNS HFAEGATVTA MGSWVLASSP ASSNYGSSPS PGRLPADMLL 1500 AAAAAGELDS PVSEAWSAQG AGIAAASSSS AGAAWRWRKA DGSIATTSIA AAAAAAATAS 1560 PHPLESLVRV ERREVQQPRA DDLRTGDSRG SSSSGGGGGD MEPIGGGGGT GGGDSRYLSP 1620 PLPVREAVAA VLISSSSCQG RTAVGPGSEQ QQQQQQQRRR QAALVPQYST APGSIVPAVL 1680 GTGGAAGGGG RERLDSVETV PQVCTFVHGS GGAAGAGAAG AGAASGIGAA TARLVGVTPG 1740 APGAAGPKGP RGDLPPSRPS SSSPLSFQQQ PGRNGPSWSA TATAKQGPSG TAIKVSGSEA 1800 PPGAPSPATA PQHPPQHQGR RSDTGEVPQG ERGPQGPVSG GCSGGGAVRP PTDPPLATSL 1860 ATPAAALARR GAGGAAAAAE GLGETEGAIT GTTTTTTTTT TTTTTATTNL SAALPGETCG 1920 ESVEREASKV ATATASRSLV RTAAARATLL VAALGVVAAI AMQRVRRSSG AWRLPFSALY 1980 GSGDGDDDGN AAAAIVSPLV ASLLAVLGVA APLLLLLLTA TRPRVRAKRV GGPAPGGEGD 2040 S*

Sequence ? help Back to Top

Protein Sequence Length: 2042 aa Download sequence Send to blast

MSASGFAHAQ WQAGPLEWNT VIMEAYDTRG AGKRRKARTS ACQAPGCTVD LSDAKPYFKR  60
HSICATHMKA PQVWINGEKM RYCQQCGHFE NLDMFIGANR SCKMSLDRRS AIAHASKRKE  120
LRSAKSRDQE GNQELSASDN TSSDKGERSG WKDLDSTWGS PEEMMRTESS RRNVLDPCLH  180
EADRPCPARD VDMALDSSHP QGSGGRLLSD RTAPFRNASN SNGLNVLPVL NDNGASSDNN  240
GHNNFNYQYS GSNPQVNGNN VVHLEPPSRC CPDVVMRDGG DDGGGGGGRG GSPEEGSSGH  300
MNFPWMRSLQ QHQQHHLQPG GPGAAGLPGL PSRTLIAFPS LHGGKPAAAA ATPHLTWDQQ  360
RQQRPEVLTA PLPAAAVTSS MYGGGIAAVA ASAASGNVTL NNATTGRLLA GASAPPQIFS  420
AAPPSVVVAL DPAELPGIHD PALERQLQDI VTSARLEGLG WYGRPPGSGT NMSPYLPTGN  480
EGASGFADVA GPPSQQAHYS LARGAPGPAG FDGSGGGGGG RHACTGSAAI GGGGSHQVRG  540
RGVAGAACTA AANGTAAAAA APSAPEPSLA TALWYHRQAA DDVGDVGGTA GGWVQPKSKP  600
GGQNGAASGS SGSSLETCMH YLSQQPPQQQ VPQHSYGYEY GDVGAGGSYG GGAASPATHG  660
PGSAGGRGHR AVGLGRGGAL RGLLGYRSGE PDQLVRMALK LTSRAPHELE PSTIASLRRM  720
LSVYDKLQSV QGYVRPGCTE LIVDAHRPGS TATERMMRIA AAAAAAGAGG GGGDGGDGGG  780
NNNNNAYTSG GAASDAAAAS SSSGNSSLST ATGGGLGCRF SLGGDALTTV SSSGGGGGGG  840
AVSAGSPSSS SWWYESDSGS CQGIRTTALA EAGLAVLKER LRPLPLDGEA AAAAAAAAVE  900
GRVEGGVRGR LGGLRALTLS RVLLERRSCE GGVVGAEAVL RSPDVLAALR DIATVNDTAL  960
TCQLGDMAVR VSEEGDVGDV QKLLALPTIV AASCAAISAD KPVTEVLVYG TNLERFGMAF  1020
WARMHGVCYQ LQFRTSRGGA VMLQLPALPQ VGLLQLEAVS PGGGAVGPSY PLLVLPSAGA  1080
VEEVHALARL MGPASLRRFI ADFGFVLGVG ALLSLPLNGI TPVKSGPSMS LGLGPESVSA  1140
SDSTSSAFNS AVNVDVQPGG GGTWGSTESA DVSCGNTGDA PAEETNSSSG QPAVAMAASQ  1200
ATAMAAAMAA AAAPLVMPMR RRGVLSRGGS RTSSRNTSPE NSGTRGLFSE RNDPTDAMTN  1260
ADDEQVVELL LSAGAVRSLL DTSVTLLHTL VERRMQHCIA LLVDRLSELG ERFPDRVHGG  1320
LAPPLAPGPA FVLMHAAARV GDLRLLMPLL ALEGLLGEHC SLTARGVNGV TPLHLIALLP  1380
QAPLLVRSLQ RLQPGLEQAL GTLEADDGVT PSQLFHMMHV AATTNDCAPT TATAGGGGGD  1440
GGGGGGGGGA SSSPPHQRNS HFAEGATVTA MGSWVLASSP ASSNYGSSPS PGRLPADMLL  1500
AAAAAGELDS PVSEAWSAQG AGIAAASSSS AGAAWRWRKA DGSIATTSIA AAAAAAATAS  1560
PHPLESLVRV ERREVQQPRA DDLRTGDSRG SSSSGGGGGD MEPIGGGGGT GGGDSRYLSP  1620
PLPVREAVAA VLISSSSCQG RTAVGPGSEQ QQQQQQQRRR QAALVPQYST APGSIVPAVL  1680
GTGGAAGGGG RERLDSVETV PQVCTFVHGS GGAAGAGAAG AGAASGIGAA TARLVGVTPG  1740
APGAAGPKGP RGDLPPSRPS SSSPLSFQQQ PGRNGPSWSA TATAKQGPSG TAIKVSGSEA  1800
PPGAPSPATA PQHPPQHQGR RSDTGEVPQG ERGPQGPVSG GCSGGGAVRP PTDPPLATSL  1860
ATPAAALARR GAGGAAAAAE GLGETEGAIT GTTTTTTTTT TTTTTATTNL SAALPGETCG  1920
ESVEREASKV ATATASRSLV RTAAARATLL VAALGVVAAI AMQRVRRSSG AWRLPFSALY  1980
GSGDGDDDGN AAAAIVSPLV ASLLAVLGVA APLLLLLLTA TRPRVRAKRV GGPAPGGEGD  2040
S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-14	42	120	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002957657.1	0.0	hypothetical protein VOLCADRAFT_98744
TrEMBL	D8UG65	0.0	D8UG65_VOLCA; Uncharacterized protein
STRING	XP_002957657.1	0.0	(Volvox carteri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	5e-17	squamosa promoter binding protein-like 3

Link Out ? help Back to Top
Phytozome	Vocar.0022s0024.1.p