PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0019s0075.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

C2H2

Protein Properties

Length: 445aa MW: 43904.2 Da PI: 9.111

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0019s0075.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	126	149	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ C++sF ++ L+rH + H Vocar.0019s0075.1.p 126 FACSQCDRSFATSQGLMRHNQAkH 149 78*****************76555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	27	4	26	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	0.0085	126	149	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.074	126	154	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	128	149	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.099	274	302	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.75	274	297	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	276	297	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MATNLCAECG TRLPRPEYKI HMQQVHGVPV MDDSDDDDQA KTAQGSASAA EGADEAPLQQ 60 RPGRGGGRNN TRREKAGSAA AAATDGDASP VDGDGADAAP RANGSRRRRG GRRPTAGDGK 120 AEGGEFACSQ CDRSFATSQG LMRHNQAKHA ESATAAAAAA VSSAISAPTP VRRGGRQRPT 180 GNDTAAAAEG GSSARSPVEN GDGGPQAAAA AGAPAAAAAA ARQPSRRRPR QPPAAAPPLD 240 PEAAEAAAAA SAAAKAALDG SPAEPKPERF VTLLRCKLCE QGFKSKNRAR SHVGEVHRDA 300 VPPAKNEGTE AAEAKAEGGA VAADELLELV QVPARRAPRA PGRRTRKTRA AAGGPDGEAV 360 AEGGPTDLKG ATRPATGVRR GGRPPKKAAA AAAAAAADEL ALEAPSAPEG VSATVTTAGG 420 GGGGAAATGA VTDELAALGI VSSS*

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MATNLCAECG TRLPRPEYKI HMQQVHGVPV MDDSDDDDQA KTAQGSASAA EGADEAPLQQ  60
RPGRGGGRNN TRREKAGSAA AAATDGDASP VDGDGADAAP RANGSRRRRG GRRPTAGDGK  120
AEGGEFACSQ CDRSFATSQG LMRHNQAKHA ESATAAAAAA VSSAISAPTP VRRGGRQRPT  180
GNDTAAAAEG GSSARSPVEN GDGGPQAAAA AGAPAAAAAA ARQPSRRRPR QPPAAAPPLD  240
PEAAEAAAAA SAAAKAALDG SPAEPKPERF VTLLRCKLCE QGFKSKNRAR SHVGEVHRDA  300
VPPAKNEGTE AAEAKAEGGA VAADELLELV QVPARRAPRA PGRRTRKTRA AAGGPDGEAV  360
AEGGPTDLKG ATRPATGVRR GGRPPKKAAA AAAAAAADEL ALEAPSAPEG VSATVTTAGG  420
GGGGAAATGA VTDELAALGI VSSS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002950211.1	0.0	hypothetical protein VOLCADRAFT_104605
TrEMBL	D8TUT8	0.0	D8TUT8_VOLCA; Uncharacterized protein
STRING	XP_002950211.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP13968	2	2

Link Out ? help Back to Top
Phytozome	Vocar.0019s0075.1.p