PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0017s0204.3.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB
Protein Properties Length: 1311aa    MW: 133179 Da    PI: 7.0481
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0017s0204.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.7e-1771113346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +WT+eEde+l  +v+ +G + W+ Ia+ ++ gRt+k+c++rw +
  Vocar.0017s0204.3.p  71 AWTKEEDEQLRSLVETHGANKWTEIAAGLP-GRTGKSCRLRWVN 113
                          7*****************************.***********88 PP
2Myb_DNA-binding513.4e-16123166348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          ++T+ Ed+++v+  + +G++ W++Iar+++ gRt++++k+rw++yl
  Vocar.0017s0204.3.p 123 AFTPAEDQKIVEMQATYGNK-WSAIARELP-GRTDNMVKNRWNSYL 166
                          79******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.28964115IPR017930Myb domain
SuperFamilySSF466891.69E-2867162IPR009057Homeodomain-like
SMARTSM007179.9E-1568117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2371122IPR009057Homeodomain-like
CDDcd001672.59E-1571113No hitNo description
PfamPF002498.4E-1671114IPR001005SANT/Myb domain
PROSITE profilePS5129423.293116170IPR017930Myb domain
SMARTSM007175.9E-15120168IPR001005SANT/Myb domain
PfamPF002491.4E-14122166IPR001005SANT/Myb domain
CDDcd001672.82E-12123166No hitNo description
Gene3DG3DSA:1.10.10.604.5E-21123169IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1311 aa     Download sequence    Send to blast
MEKWRQDGGD CESASMSTTD TDDSSGCEEV PEHEVTSTRR GASGARATSG SHGTAGSASL  60
GDPLNRTPYR AWTKEEDEQL RSLVETHGAN KWTEIAAGLP GRTGKSCRLR WVNQLRGDLL  120
TSAFTPAEDQ KIVEMQATYG NKWSAIAREL PGRTDNMVKN RWNSYLKRRV EMGRAIALSL  180
GLGLVPAPGA EATSAEAASQ HPQLQQPQQQ QQMTVLPSPR RRRSGDGWAT ATSEGRERQR  240
RSMEHSGGAV TGSGATTSSV GGGGGGRSGG PGRRSSSRGR GAGSRGAACS ASASSQQQQV  300
PPATSAAMPA SCGPGAPPAA LLPGHVTSGL QTASSAPAGT IPAAPPSFVL PLPAGHTGAT  360
AATHHVPVWH HAGATGTVSV FLDQQHHPLQ STGGAPTLAT SSFTSAGGTV PAAASHIAPP  420
LLPSGMMPSP AFPASHNVAA SSSSSSSAPP TAALSTFGLG GVAASGLTVQ AAASGVPGIT  480
VGVLGGSTAG ACGGGFMTTG AGLPMIPHVG GGACFMQGQA LHPQAHPLQQ QPAMQGIQWL  540
QPPQQQQMQL PLQQQQPQPQ VLHGAVPGYT VLPSLHPQQQ PQQQQGQQLM VPPPQQQQHL  600
VAAAAPMVAA AAGSPDRDST NAQRVALLQQ YFMKHLPAEQ AAIAAAAALN LFHQTAAVEA  660
QRAAAASAAS QQSQPPLPQQ PQVQQQSVPA TMRTSNSDGL PQIPELPWTA SAPSGSRQLS  720
AAATTATDAG YPSMASAASA AAACSFFLGG PMYGTLSMPS VIPISNPNAA EAFPAVAAAN  780
NTACGASPPK RIRMRRDDTG VSTVAASFPD PRAPPFDLQQ SHQRTGTTVA AQHRPQDLPQ  840
PQRSDEPMRG SDGPGARRSL DGAPSASQSS SESSGRLPRQ VLAAPLQHQE AGMAHTVPAV  900
EAVAAPAGPV PSTSSGGLGH HARMRDGLQL TELLMASPIC DPLPPPQQPQ DMFILGGSSP  960
EGSPPKCGGG ALSKRIVASA PALAAGAAAA VVAAPSSGEH SVEALMAMDL GFAAAAVGSG  1020
SRNATASEQR LQFPVGDETQ PAVQAASHDE LTPSRAQQGT GGDAFGISPV GTGTASGGDG  1080
MLWEAAVQRG CLLHGAAAAS CGRREDMKPV ASGAAAFPAA HDIHCPTTGL ATAAKGTTVR  1140
PSQPGHHYHH HHPTQGHHHQ RAHLMTQHQQ QSGRPYDGHD DSSTPHRNRD AEDFLSHALC  1200
GFLVDNPMGI PTPVDMSPLT GSMSDLAAAA GDDNDGEAHG VVDSLPSDWH LDGIMDKAHL  1260
PWSTVDLAAH PGSSPPDLSL SGGNTVAAAG GLQAKGSSGG NGGGIGSFVA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-297217110109B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234242GRERQRRSM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-34myb domain protein 77