PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0015s0208.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C2H2
Protein Properties Length: 949aa    MW: 98142.5 Da    PI: 10.2479
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0015s0208.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00059569589223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +Cp+Cg++  r++ L++H++ +
  Vocar.0015s0208.1.p 569 PCPHCGRTM-RPEALRHHMNAC 589
                          6********.*********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139130.0048156177No hitNo description
SMARTSM007341.7230253IPR006642Zinc finger, Rad18-type putative
PfamPF139134.2E-7230252No hitNo description
PfamPF139130.0048319340No hitNo description
SMARTSM007341.7393416IPR006642Zinc finger, Rad18-type putative
PfamPF139134.2E-7393415No hitNo description
PfamPF139130.0044495514No hitNo description
SMARTSM0073411567590IPR006642Zinc finger, Rad18-type putative
PfamPF139139.8E-4567589No hitNo description
PfamPF139130.005644666No hitNo description
PfamPF139131.1E-5756779No hitNo description
SMARTSM007340.44896919IPR006642Zinc finger, Rad18-type putative
PfamPF139133.8E-6896918No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 949 aa     Download sequence    Send to blast
MYYSDYNNSP YATGGSLARQ QSLSRQQSVR NSTGSINPTS GRGVLDSYSQ QPGARPSSSQ  60
AYGQRASQSG AALYSCNSGN AVVLPGAAQR PSGSGAGLAS GTKVPLSQRL AQVKAVYSAA  120
KLSRSVNSPW GGGGGGGGGG GGAPGRTAGQ RPMGFTCYLC GQQYGSQSLM VHIPQCQKKW  180
MMVESQKPRR EQRPLPPVPP ELERGVLPTR AEEVDEFNSK MYAYWDKVSL VSCPICARTF  240
RPDAFQHHAK VCTPDNPGGP LGPNKHAAPP PPRPTSAPRM GRPGGGGGGG FGGGGGGGGG  300
ARGIASPART AGQRPMGFTC YLCGQQYGSQ SLMVHIPQCQ KKWMMVESQK PRREQRPLPP  360
VPPELERGVL PTRAEEVDEF NSKMYAYWDK VSLVSCPICA RTFRPDAFQH HAKVCTPDNP  420
GGPLGPNKHA APPPPRPTSA PRMGRPGGGG GGGFGGGGGG GGGYGAGMGG RQPSPMRGGG  480
TPPRREGERP RAYVCYLCGQ QFGSQSLTIH IPRCYEKWLK VEATKPPKER RQPPPPPPEL  540
DQPLPTTSQA IDEFNSRMFS YFNGASLMPC PHCGRTMRPE ALRHHMNACT AEKPMARPGG  600
GGGGGAGGGG GMGGGGGGRS AAGGGVRGGG PSEYPEEMDS PGELEMCANC GRKMRPDALA  660
KHQRMCTADK PMKPLRQAGG APGGGGVQSG TAAGRAAAAG GGGGGGGMHR NQGGGGGAAN  720
EYDAYAADGP EPPKASYDLP PDAVGYGDDD DGGEARVQCG TCGRRFLPQA YDKHARVCSK  780
VFAGKRKVFN SAAKRVAGTE AAAYYNPRTA QRPVPPAGPA PSGGGRSRPM SAMGRGGGGG  840
GGGGGRGFGG GQPKWKAQSD QLRQAMRDMR KVGAALARGE DIRNIPYVPS APDPSLVQCP  900
NCGRRFNHQA AERHIPRCAS IISKPKFLKA GTGGAGRGAP DSKPLPRW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1834845RGGGGGGGGGGR
2843850GGRGFGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002946931.10.0hypothetical protein VOLCADRAFT_87026
TrEMBLD8TJZ50.0D8TJZ5_VOLCA; Uncharacterized protein
STRINGXP_002946931.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP778756