PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0013s0173.2.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

ERF

Protein Properties

Length: 2043aa MW: 201818 Da PI: 6.8422

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0013s0173.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.5	1.4e-12	72	121	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 g +GV++ +k grW A I +++slg+f ++eeAa+++++a+++++g+ Vocar.0013s0173.2.p 72 GLRGVWFSRKLGRWQAGISA------AgRTISLGTFTSEEEAARLYDKAALRIRGA 121 579************888......34***********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	15.738	72	128	IPR001471	AP2/ERF domain
Pfam	PF00847	1.6E-8	73	120	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.9E-12	73	129	IPR016177	DNA-binding domain
SMART	SM00380	6.7E-10	74	134	IPR001471	AP2/ERF domain
CDD	cd00018	9.87E-14	74	130	No hit	No description
Gene3D	G3DSA:3.30.730.10	4.2E-13	74	129	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2043 aa Download sequence Send to blast
MNGIVELADR TRDEEVIAME ALKSLSESQR IKPSMLDPTI SLSMQRQTEL PGRFSRMHSE 60 LPQQAGYTKQ LGLRGVWFSR KLGRWQAGIS AAGRTISLGT FTSEEEAARL YDKAALRIRG 120 AAAALNFPPS DYLLPDGALA LDLQVEALLL ESFLGRNFNE EDHQQQQLPT GGSGNSGDET 180 PVSTAAVGDL VRQCLGRINR ADRAELQEAA EALGAGYLRL MGLITDAGQI LAASGGGGAG 240 GGSSGAAAAA AVTRQTQGDG GGGGSSDVGG DEAAVVNSDC VGERVGSRLS PSSQQHQPPQ 300 PPLQQQGNHW QGMARSGTAP SATSGGPAGT SGIAVVDQGQ GQGQPARITT QGRQQQQQQQ 360 HHPYYPQPLA HDRAHHYYPV HKRQRHPQGP PLPQQQQQQP SQHVQTTQLI KTDPAVRSAL 420 ALAVPLNTKS DAQLQQRQLQ QQQQQRDAMM EENGAGSPQD RARVPRSQQE SPALGGPAGD 480 AADAAAAATR GGAGAGGGRD ALPGASSPGG PAAATAEKKA AQAAAAAAAA ATVPLQLQPE 540 LMSGVCHVLY SNMQKIQQSQ ARQLQTEGAR PAAAPPVVQA VGQLAATGIP ATVLLQAAEV 600 LLRTGGVSLK DFEAVEAAMA TWAAERRPAA AGHGGLAAAA AAAEGPQAAA ALARSGGQAH 660 HPQQQYYQQQ RHVQREPSTD SGGARVAAGG SAAVQGIARV GSGSSGGQKR KSADTATGAA 720 ADADAPPVPA SGGGSSAVEQ RMSAGDMYGN EDMPPTAKRQ HRQQRMPADS AVVVTSAPVQ 780 FLAGAAGRAA GRVAGPGDAA ATATVSDVNA SVAMAAAAAA ASAAGGVPIG VPTSPHEQAK 840 AAAAVAAATA ALSTPIGALP AAPVSMRSQL VVTPTASAER ISPSSAEAVL QHSAAAAAAV 900 AAAANAGRAG DAGGGVAVRQ QIGLGRRLFN AIASQLPQGA ELDCLLPPKY GYVGVLYSIH 960 GSTSAGAALW DGGEVHNLGL YSSDRDARQA VASSSSMANR VAAPSAAAAA TAPLLLSVAA 1020 TPAPSAARQL STVPVTGGGG SLVVGKPSVV TTGAGALPHP LPTVGSAPEV GSTRATAAAA 1080 TAAGRASATL QPYHGGGGSG GSRKTAGGGS RGGGSSGSAA AVPAQVGVAP MPQSGPGGGR 1140 HAAFALVAAR EGPAGSGGTP SGGAAGPNGV SGGGGSGPAV LIRPLGGGGG SSTTLVAAAP 1200 PSKSLLLGPR SSVTPLPLQG AVASGAAATA AAAPTGASSG NGGSRHEKQQ QQQQQAVTAA 1260 AATPPVPQRG GVQGPPTAAE PEVEAAGSSL STGPVMGPYL VGAPEIAGDG SLQLVCQLVV 1320 QQDEPLSSDD LNNVIAQKFT AANLQNLLDL AGANPLLAAA ITATAARDLH QQPPPQATAP 1380 PQQRYGSAGS GGGAAAAGPV VHGPVVTTSV ALTTTTTTTT TATAPQHPSA AAGDLPPSRH 1440 HHTHTPPGGP HHHHHPHHHH QQQQHQQPPS QQLTGASSHA HQPLAAAQTP PQRAPYPSGT 1500 AGAAAPAALL LGPPPMPFAI RHDAPAISIL TGALERDSPP EGLTDAASVR GPLQLLPSTT 1560 SQQLPTLNQQ QQTQHQVPHH PNQQQTSQQQ QQQQQQAAVR GYVLPPALSG ASRHLPSGTA 1620 LAGGGGGGGG GGGGGGGGGG GGTASAGAAG AAGSGGGGGG GDGLLLPQRG FRLQQLTPAE 1680 AAVVLAEYER EGSRDNGVSD EAWPQPNDQA AAALPRQAVA AAAAVPPAAP PPQPQPPRRS 1740 RRPEKSGGSG DLSPVGGAGN GGDDDGGGSA DSAPSLSQRY GNNTPSSVRV LLHNASTAAQ 1800 GAPAGAWALL AGPVSDPVSA GTGTAVLPRR EMTAAAAAAA TGTVSRFPRC SNDSRDEGSL 1860 SMGRVAGGGG GGGDGGNANV DEEEVEEEEE DLKQEVVVVG GDGDGDGSGG DVSWENRRRQ 1920 LLSDSDPATA VAAAAADPDP ESQLQMDSKS AARQGSDPGE MAAVTAKSGS TSSAAAEAAA 1980 AAAAAAAAAQ RAVSKVPDTG SVASLRREEV PFVAADTSGS APAQVPGRSG TSSPPDPRFE 2040 QQ*

Sequence ? help Back to Top

Protein Sequence Length: 2043 aa Download sequence Send to blast

MNGIVELADR TRDEEVIAME ALKSLSESQR IKPSMLDPTI SLSMQRQTEL PGRFSRMHSE  60
LPQQAGYTKQ LGLRGVWFSR KLGRWQAGIS AAGRTISLGT FTSEEEAARL YDKAALRIRG  120
AAAALNFPPS DYLLPDGALA LDLQVEALLL ESFLGRNFNE EDHQQQQLPT GGSGNSGDET  180
PVSTAAVGDL VRQCLGRINR ADRAELQEAA EALGAGYLRL MGLITDAGQI LAASGGGGAG  240
GGSSGAAAAA AVTRQTQGDG GGGGSSDVGG DEAAVVNSDC VGERVGSRLS PSSQQHQPPQ  300
PPLQQQGNHW QGMARSGTAP SATSGGPAGT SGIAVVDQGQ GQGQPARITT QGRQQQQQQQ  360
HHPYYPQPLA HDRAHHYYPV HKRQRHPQGP PLPQQQQQQP SQHVQTTQLI KTDPAVRSAL  420
ALAVPLNTKS DAQLQQRQLQ QQQQQRDAMM EENGAGSPQD RARVPRSQQE SPALGGPAGD  480
AADAAAAATR GGAGAGGGRD ALPGASSPGG PAAATAEKKA AQAAAAAAAA ATVPLQLQPE  540
LMSGVCHVLY SNMQKIQQSQ ARQLQTEGAR PAAAPPVVQA VGQLAATGIP ATVLLQAAEV  600
LLRTGGVSLK DFEAVEAAMA TWAAERRPAA AGHGGLAAAA AAAEGPQAAA ALARSGGQAH  660
HPQQQYYQQQ RHVQREPSTD SGGARVAAGG SAAVQGIARV GSGSSGGQKR KSADTATGAA  720
ADADAPPVPA SGGGSSAVEQ RMSAGDMYGN EDMPPTAKRQ HRQQRMPADS AVVVTSAPVQ  780
FLAGAAGRAA GRVAGPGDAA ATATVSDVNA SVAMAAAAAA ASAAGGVPIG VPTSPHEQAK  840
AAAAVAAATA ALSTPIGALP AAPVSMRSQL VVTPTASAER ISPSSAEAVL QHSAAAAAAV  900
AAAANAGRAG DAGGGVAVRQ QIGLGRRLFN AIASQLPQGA ELDCLLPPKY GYVGVLYSIH  960
GSTSAGAALW DGGEVHNLGL YSSDRDARQA VASSSSMANR VAAPSAAAAA TAPLLLSVAA  1020
TPAPSAARQL STVPVTGGGG SLVVGKPSVV TTGAGALPHP LPTVGSAPEV GSTRATAAAA  1080
TAAGRASATL QPYHGGGGSG GSRKTAGGGS RGGGSSGSAA AVPAQVGVAP MPQSGPGGGR  1140
HAAFALVAAR EGPAGSGGTP SGGAAGPNGV SGGGGSGPAV LIRPLGGGGG SSTTLVAAAP  1200
PSKSLLLGPR SSVTPLPLQG AVASGAAATA AAAPTGASSG NGGSRHEKQQ QQQQQAVTAA  1260
AATPPVPQRG GVQGPPTAAE PEVEAAGSSL STGPVMGPYL VGAPEIAGDG SLQLVCQLVV  1320
QQDEPLSSDD LNNVIAQKFT AANLQNLLDL AGANPLLAAA ITATAARDLH QQPPPQATAP  1380
PQQRYGSAGS GGGAAAAGPV VHGPVVTTSV ALTTTTTTTT TATAPQHPSA AAGDLPPSRH  1440
HHTHTPPGGP HHHHHPHHHH QQQQHQQPPS QQLTGASSHA HQPLAAAQTP PQRAPYPSGT  1500
AGAAAPAALL LGPPPMPFAI RHDAPAISIL TGALERDSPP EGLTDAASVR GPLQLLPSTT  1560
SQQLPTLNQQ QQTQHQVPHH PNQQQTSQQQ QQQQQQAAVR GYVLPPALSG ASRHLPSGTA  1620
LAGGGGGGGG GGGGGGGGGG GGTASAGAAG AAGSGGGGGG GDGLLLPQRG FRLQQLTPAE  1680
AAVVLAEYER EGSRDNGVSD EAWPQPNDQA AAALPRQAVA AAAAVPPAAP PPQPQPPRRS  1740
RRPEKSGGSG DLSPVGGAGN GGDDDGGGSA DSAPSLSQRY GNNTPSSVRV LLHNASTAAQ  1800
GAPAGAWALL AGPVSDPVSA GTGTAVLPRR EMTAAAAAAA TGTVSRFPRC SNDSRDEGSL  1860
SMGRVAGGGG GGGDGGNANV DEEEVEEEEE DLKQEVVVVG GDGDGDGSGG DVSWENRRRQ  1920
LLSDSDPATA VAAAAADPDP ESQLQMDSKS AARQGSDPGE MAAVTAKSGS TSSAAAEAAA  1980
AAAAAAAAAQ RAVSKVPDTG SVASLRREEV PFVAADTSGS APAQVPGRSG TSSPPDPRFE  2040
QQ*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002951045.1	0.0	hypothetical protein VOLCADRAFT_91440
TrEMBL	D8TX32	0.0	D8TX32_VOLCA; Uncharacterized protein
STRING	XP_002951045.1	0.0	(Volvox carteri)

Link Out ? help Back to Top
Phytozome	Vocar.0013s0173.2.p