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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0013s0173.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | ERF | ||||||||
Protein Properties | Length: 2043aa MW: 201818 Da PI: 6.8422 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.5 | 1.4e-12 | 72 | 121 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 g +GV++ +k grW A I +++slg+f ++eeAa+++++a+++++g+ Vocar.0013s0173.2.p 72 GLRGVWFSRKLGRWQAGISA------AgRTISLGTFTSEEEAARLYDKAALRIRGA 121 579**************888......34*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.738 | 72 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-8 | 73 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-12 | 73 | 129 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.7E-10 | 74 | 134 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.87E-14 | 74 | 130 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.2E-13 | 74 | 129 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 2043 aa Download sequence Send to blast |
MNGIVELADR TRDEEVIAME ALKSLSESQR IKPSMLDPTI SLSMQRQTEL PGRFSRMHSE 60 LPQQAGYTKQ LGLRGVWFSR KLGRWQAGIS AAGRTISLGT FTSEEEAARL YDKAALRIRG 120 AAAALNFPPS DYLLPDGALA LDLQVEALLL ESFLGRNFNE EDHQQQQLPT GGSGNSGDET 180 PVSTAAVGDL VRQCLGRINR ADRAELQEAA EALGAGYLRL MGLITDAGQI LAASGGGGAG 240 GGSSGAAAAA AVTRQTQGDG GGGGSSDVGG DEAAVVNSDC VGERVGSRLS PSSQQHQPPQ 300 PPLQQQGNHW QGMARSGTAP SATSGGPAGT SGIAVVDQGQ GQGQPARITT QGRQQQQQQQ 360 HHPYYPQPLA HDRAHHYYPV HKRQRHPQGP PLPQQQQQQP SQHVQTTQLI KTDPAVRSAL 420 ALAVPLNTKS DAQLQQRQLQ QQQQQRDAMM EENGAGSPQD RARVPRSQQE SPALGGPAGD 480 AADAAAAATR GGAGAGGGRD ALPGASSPGG PAAATAEKKA AQAAAAAAAA ATVPLQLQPE 540 LMSGVCHVLY SNMQKIQQSQ ARQLQTEGAR PAAAPPVVQA VGQLAATGIP ATVLLQAAEV 600 LLRTGGVSLK DFEAVEAAMA TWAAERRPAA AGHGGLAAAA AAAEGPQAAA ALARSGGQAH 660 HPQQQYYQQQ RHVQREPSTD SGGARVAAGG SAAVQGIARV GSGSSGGQKR KSADTATGAA 720 ADADAPPVPA SGGGSSAVEQ RMSAGDMYGN EDMPPTAKRQ HRQQRMPADS AVVVTSAPVQ 780 FLAGAAGRAA GRVAGPGDAA ATATVSDVNA SVAMAAAAAA ASAAGGVPIG VPTSPHEQAK 840 AAAAVAAATA ALSTPIGALP AAPVSMRSQL VVTPTASAER ISPSSAEAVL QHSAAAAAAV 900 AAAANAGRAG DAGGGVAVRQ QIGLGRRLFN AIASQLPQGA ELDCLLPPKY GYVGVLYSIH 960 GSTSAGAALW DGGEVHNLGL YSSDRDARQA VASSSSMANR VAAPSAAAAA TAPLLLSVAA 1020 TPAPSAARQL STVPVTGGGG SLVVGKPSVV TTGAGALPHP LPTVGSAPEV GSTRATAAAA 1080 TAAGRASATL QPYHGGGGSG GSRKTAGGGS RGGGSSGSAA AVPAQVGVAP MPQSGPGGGR 1140 HAAFALVAAR EGPAGSGGTP SGGAAGPNGV SGGGGSGPAV LIRPLGGGGG SSTTLVAAAP 1200 PSKSLLLGPR SSVTPLPLQG AVASGAAATA AAAPTGASSG NGGSRHEKQQ QQQQQAVTAA 1260 AATPPVPQRG GVQGPPTAAE PEVEAAGSSL STGPVMGPYL VGAPEIAGDG SLQLVCQLVV 1320 QQDEPLSSDD LNNVIAQKFT AANLQNLLDL AGANPLLAAA ITATAARDLH QQPPPQATAP 1380 PQQRYGSAGS GGGAAAAGPV VHGPVVTTSV ALTTTTTTTT TATAPQHPSA AAGDLPPSRH 1440 HHTHTPPGGP HHHHHPHHHH QQQQHQQPPS QQLTGASSHA HQPLAAAQTP PQRAPYPSGT 1500 AGAAAPAALL LGPPPMPFAI RHDAPAISIL TGALERDSPP EGLTDAASVR GPLQLLPSTT 1560 SQQLPTLNQQ QQTQHQVPHH PNQQQTSQQQ QQQQQQAAVR GYVLPPALSG ASRHLPSGTA 1620 LAGGGGGGGG GGGGGGGGGG GGTASAGAAG AAGSGGGGGG GDGLLLPQRG FRLQQLTPAE 1680 AAVVLAEYER EGSRDNGVSD EAWPQPNDQA AAALPRQAVA AAAAVPPAAP PPQPQPPRRS 1740 RRPEKSGGSG DLSPVGGAGN GGDDDGGGSA DSAPSLSQRY GNNTPSSVRV LLHNASTAAQ 1800 GAPAGAWALL AGPVSDPVSA GTGTAVLPRR EMTAAAAAAA TGTVSRFPRC SNDSRDEGSL 1860 SMGRVAGGGG GGGDGGNANV DEEEVEEEEE DLKQEVVVVG GDGDGDGSGG DVSWENRRRQ 1920 LLSDSDPATA VAAAAADPDP ESQLQMDSKS AARQGSDPGE MAAVTAKSGS TSSAAAEAAA 1980 AAAAAAAAAQ RAVSKVPDTG SVASLRREEV PFVAADTSGS APAQVPGRSG TSSPPDPRFE 2040 QQ* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002951045.1 | 0.0 | hypothetical protein VOLCADRAFT_91440 | ||||
TrEMBL | D8TX32 | 0.0 | D8TX32_VOLCA; Uncharacterized protein | ||||
STRING | XP_002951045.1 | 0.0 | (Volvox carteri) |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0013s0173.2.p |