PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0013s0008.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB_related
Protein Properties Length: 936aa    MW: 100938 Da    PI: 7.2679
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0013s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.8e-1072116147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r  WT  E+e l++++   G+  W+ Ia++++ gRt++++k+ w++ 
  Vocar.0013s0008.1.p  72 RPEWTRNEEETLAQVHCGVGNQ-WSVIAARLP-GRTANEVKNIWHST 116
                          679*****************99.*********.*********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.48E-1165122IPR009057Homeodomain-like
PROSITE profilePS5129417.03567121IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.2E-1567120IPR009057Homeodomain-like
SMARTSM007171.5E-771119IPR001005SANT/Myb domain
PfamPF002495.9E-972115IPR001005SANT/Myb domain
CDDcd001671.31E-674117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 936 aa     Download sequence    Send to blast
MGDPQPLAQE ALKPDTDELN RRQAASSDSD GSASIDEDDM SESGSENYYE PTRRGGSRRI  60
ANKSPMRKRR KRPEWTRNEE ETLAQVHCGV GNQWSVIAAR LPGRTANEVK NIWHSTLRSK  120
HLKARSLLRA YATALNGRWD DETARHEAYT AALRQHTVSA GGTDPSTGAL EGGGLRDMAF  180
NQDDDTQTPR MGSVQAGAGT IVAQTPDNNQ SPAAVLARNR GGRGPPATAP RPLANDRVTG  240
RGGQHRHQHP DNPRVPPSPT SCPTKAMQGL VNRLETRGGT TTGARRNLND ALAFPSRGRV  300
LDGGSAPGTS LAVTGLAHEN ALPPATAARP LPLSFAGTWG PQLVMQRPWP HPHLRDVSDL  360
KLQQEQQQQQ ELQQQQMQQQ QQQIQRQQQP QQPVFHQPQP HGGPQLTASV ITKNEPKDPS  420
AAASPHPGPG PLLGFDSLET WIGRLDPSIM LQDDDPGARE QLCRGGADST SSSVAPAVSA  480
PAPAAAAGGP GDVPGALQPT VANTSASGEL VESGRSRLLT WPRPEQRLLG PPNTATHYGR  540
AGPASGAWSS NSGAGVPQLQ PSPTEGGINL HHAGSQAAAP NLSTAMAISP TARGGADVFS  600
GGNGSAQGSG AVERLSPAAG HWHTSITAAT VHGSHDRTLA SPYGLSAAAV YAPPPGMITG  660
SEGCGWATSP GGWALGAPRP PLPFTGRPVA LGLSHEAWRS ELPAPQELGI RPVPPADMRG  720
GMYMVPVHAP AQPIPHMVYA SPQPHVPPSL GQQHCNNFNS AQRLRQQEQI VYQQQQQCLH  780
HHHHQYHQQR QEHQQQLRYH NHEQYKEQHQ QTLAYQQAGQ QEQQYQQQSQ QFKQEPQGEQ  840
LHQHSEAANQ SQQQHLLQHP LTNVPLALSQ HHQQQVLEQQ QAQSSHLEQK LPTQQQSQVQ  900
QLEQHADSLS SSEVVTMGLE SLQDPQLRWC LLDME*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002955360.10.0hypothetical protein VOLCADRAFT_96237
TrEMBLD8U9K70.0D8U9K7_VOLCA; Uncharacterized protein
STRINGXP_002955360.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP776526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-14MYB-like 102