PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0011s0304.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB
Protein Properties Length: 836aa    MW: 91595.2 Da    PI: 8.4131
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0011s0304.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.5e-13853248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         g W   Ede+l+ av ++G ++W++I++ +  ++++kqck rw+ +l
  Vocar.0011s0304.1.p  8 GVWKNTEDEILKAAVMKYGLNQWARISSLLV-RKSAKQCKARWYEWL 53
                         78*****************************.************986 PP
2Myb_DNA-binding30.77.5e-1060102247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            WT eEde+l+++ k+++   W+tIa  +g  Rt+ qc +r+  +
  Vocar.0011s0304.1.p  60 TEWTREEDEKLLHLAKLMPCQ-WRTIAPIVG--RTPAQCLDRYERL 102
                          68*****************88.********8..*********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.946257IPR017930Myb domain
SMARTSM007172.1E-14655IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-18960IPR009057Homeodomain-like
CDDcd001675.64E-121053No hitNo description
PfamPF139214.2E-131070No hitNo description
SuperFamilySSF466893.27E-2033107IPR009057Homeodomain-like
CDDcd116592.64E-3155107No hitNo description
SMARTSM007178.6E-1258105IPR001005SANT/Myb domain
PROSITE profilePS5129415.74758107IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-1461105IPR009057Homeodomain-like
PfamPF118318.3E-43449681IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGLNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPCQ WRTIAPIVGR TPAQCLDRYE RLLDQAVAKD VNYDPRDDPR  120
RLRPGEIDPN PESKPARPDA VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LAQLQKKREL KAAGIEVRGR FKNARAVDYN AEVPFELKPQ AGFYSTEEEE QVTRSMQQEF  240
RPVTVEELEG RRRKDIEEAL IKKDIKRQKL NEMHDAPGAV AQAMGLDQQG ARRRGKLMLP  300
APQVSEAELE QIARLGVDGA LEASVQEGAG GDATRTLLGQ YGQTPRLGPG ATPMRTPRTG  360
AAGGGDRIMA EAAALARLQG MGTVLEGGDT GVDVASMDFA GVTPRHVVAA TPNPLAAMAT  420
PSVRGGAAAG GGGATGARIV PAIAGAAATP SVAGTPLRGG GSSAVPGATP LLPVIRDELG  480
LNEADVMAAA MEMSGGNKRA AAARQAAVRG ELRDRLAGLP APQNEYAFEV PEVEQEAPAE  540
EMEEDLADAR ARKAREEEER RRLEELKKSK AVQRQLPRPL SVDSLPGPKV AASAGVAAGG  600
LRERAEELVA AEMAALLTHD ANKYPVKDSR ADTKKKSTGP ASRPAGPSGP LEEFDLQELK  660
AADELVQREV AFLRKAWDHT ALPPSDYLDV WLAVHRDLIY LPSRQRYERA ASATNVDRIE  720
SIKCEFEFVR GDMEREARKA AKLEAKLGLL LTGLQRRHGE LSGRIGELWG QVRDAAQELA  780
CFKALHEREL HAAPERLEAL GELLSAAQRR EVELQERYKA LTRRMEDLTE ALART*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.028283798Cell division cycle 5-like protein
5xjc_L0.028283798Cell division cycle 5-like protein
5yzg_L0.028283798Cell division cycle 5-like protein
5z56_L0.028283798Cell division cycle 5-like protein
5z57_L0.028283798Cell division cycle 5-like protein
5z58_L0.028283798Cell division cycle 5-like protein
6ff4_L0.028283798Cell division cycle 5-like protein
6ff7_L0.028283798Cell division cycle 5-like protein
6icz_L0.028283798Cell division cycle 5-like protein
6id0_L0.028283798Cell division cycle 5-like protein
6id1_L0.028283798Cell division cycle 5-like protein
6qdv_O0.028283798Cell division cycle 5-like protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002956078.10.0hypothetical protein VOLCADRAFT_107065
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLD8UBS50.0D8UBS5_VOLCA; Uncharacterized protein
STRINGXP_002956078.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP10401617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]