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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0011s0281.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | MYB_related | ||||||||
Protein Properties | Length: 395aa MW: 41077.7 Da PI: 7.0712 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.6e-15 | 65 | 110 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE++ ++++ ++lG+g+W++Ia+ + Rt+ q+ s+ qk+ Vocar.0011s0281.1.p 65 QPWTEEEHLAFLEGLRKLGKGNWRAIAKSFVPSRTPTQVASHAQKH 110 79****************************99************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.801 | 57 | 115 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.18E-15 | 63 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-12 | 63 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-13 | 65 | 110 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.0E-13 | 65 | 110 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 5.6E-14 | 66 | 113 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 1.23E-11 | 66 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MSPPAASLSS HLELACERDR FAAASILLSM SHEEPPQPDV ETSDEQHNSS DAANANRKAC 60 VSTGQPWTEE EHLAFLEGLR KLGKGNWRAI AKSFVPSRTP TQVASHAQKH FMRIAGATKR 120 KSRFTAWEVE VGVPAKTVQA GDSPQLPQEN AQCPQQPAKL QASSYQGMVA PFPAMPFPFM 180 HPMMFGFPAP FFPPFLCPPP AFAASALSAM QKQGSMPMLL PPMFPMAAAM MAMNPFCMAQ 240 QMTAAAQAAV ANTAAVVHAA TSCGCTTAGT GPTATTDTAN SDDVPRRTLP APPGSPPICK 300 PEALHARPSA AAAASGAAAV LQCRVPGNVQ SRITASGGPG EGTLPRAPVS GSLVDNDPLQ 360 LLAAAAARPD DGVGAFHTSS HSAFRPPQEA EAES* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2J7ZUN9 | 8e-48 | A0A2J7ZUN9_9CHLO; Transcription factor DIVARICATA (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP322 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61620.1 | 5e-25 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0011s0281.1.p |