PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0011s0137.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

C2H2

Protein Properties

Length: 389aa MW: 40097.5 Da PI: 5.1233

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0011s0137.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.6e-05	173	197	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C+ C+k +s+ +L+ H+++ H Vocar.0011s0137.1.p 173 FYCEVCDKQYSTAKQLEEHLSSydH 197 79*****************998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00443	5.3E-16	72	119	IPR000467	G-patch domain
Pfam	PF01585	4.2E-15	74	117	IPR000467	G-patch domain
PROSITE profile	PS50174	17.451	74	121	IPR000467	G-patch domain
SuperFamily	SSF57667	1.16E-7	169	205	No hit	No description
Pfam	PF12171	9.0E-7	173	194	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	9.349	173	202	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	175	197	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MNPAQPPGVP SVLFPGIAVV DPRLAAPRGE EWTNAYQESH RRGFDDDENW ARPPGPGDND 60 DVAEPNDGAA PIGTSNIGFK LLQKMGWKEG KGLGKQETGV VEPVRAGVDA GVRLGLGKQE 120 EDDLHTSEAT AARRRLEIEV AAEEDEAAAR KREAVAEVLQ KRAEDVKEML QTFYCEVCDK 180 QYSTAKQLEE HLSSYDHHHR KRLAETKAAM AERNRGDRQR REQKVADKEM ARLQKQIEAA 240 QQRIRQQQPP LPPDEPPPPL PPPLEAVSSP PPLPPQEAAE APPLGSTSGG GGSAAAAASA 300 ASAGSCGGGG GSMAPLGGLG GISFGLGGRG AGSGGRVGAL ARGGLKRPGG ALGLLGRPAK 360 GGGTGGGAVA AGFGLDSDDE EEGAGAGS*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MNPAQPPGVP SVLFPGIAVV DPRLAAPRGE EWTNAYQESH RRGFDDDENW ARPPGPGDND  60
DVAEPNDGAA PIGTSNIGFK LLQKMGWKEG KGLGKQETGV VEPVRAGVDA GVRLGLGKQE  120
EDDLHTSEAT AARRRLEIEV AAEEDEAAAR KREAVAEVLQ KRAEDVKEML QTFYCEVCDK  180
QYSTAKQLEE HLSSYDHHHR KRLAETKAAM AERNRGDRQR REQKVADKEM ARLQKQIEAA  240
QQRIRQQQPP LPPDEPPPPL PPPLEAVSSP PPLPPQEAAE APPLGSTSGG GGSAAAAASA  300
ASAGSCGGGG GSMAPLGGLG GISFGLGGRG AGSGGRVGAL ARGGLKRPGG ALGLLGRPAK  360
GGGTGGGAVA AGFGLDSDDE EEGAGAGS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002950422.1	0.0	hypothetical protein VOLCADRAFT_117540
TrEMBL	D8TV16	0.0	D8TV16_VOLCA; Uncharacterized protein
STRING	XP_002950422.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5642	6	6

Link Out ? help Back to Top
Phytozome	Vocar.0011s0137.1.p