PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0009s0221.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

MYB_related

Protein Properties

Length: 967aa MW: 96222.7 Da PI: 7.0019

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0009s0221.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.7	3.1e-09	82	118	4	42
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 W E lv ++ lG++ W++Ia+++ gR++++ck+ Vocar.0009s0221.1.p 82 WRSSELSTLVLLHSALGNK-WSAIAKYLH-GRSDNDCKN 118 9999999**********.*****.******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.293	74	128	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.7E-13	76	127	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.08E-10	77	128	IPR009057	Homeodomain-like
SMART	SM00717	8.2E-7	78	126	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-7	82	121	IPR001005	SANT/Myb domain
CDD	cd00167	4.00E-5	82	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 967 aa Download sequence Send to blast
MEGQTYPAEL SKGLMDSDPT LPAPMETQPQ FSAEANQQGC ASPNCSAGCC VVLASGGTQG 60 GLMPDCACAR GNRFRGCKRR IWRSSELSTL VLLHSALGNK WSAIAKYLHG RSDNDCKNIF 120 YSALRSKTSQ TNRLLRTYAQ AVGPNCDDPL ARQNAYKTAK AQVAARNASL ISRAAALAPR 180 NRQNSRGGSA SDDDSDIPAD AAAAAAQAAA GLPQADAAAA AAAAAVAGAD GGEAPEDIDP 240 MDAGAYVSAL QLQQATAAAA AAAAAGSSGS GGPQDPSPSS NSNRALIRRL SAQSGNRDSS 300 MYGSGSGGGG GGGGGGGSPS IAPTFSQGTA AAAAATAAAG APLARTKSQS FRDGASEGHP 360 AGSGRQHQHQ HQQPSQPQHL HQLVLPAWAA SGRALLPPAA GHPLRQVRPR LMPFGPHPSP 420 LSVGMAATSH DSLQLASPSA AVQNGGGAAA DGVLAENYGA SASSTESLQD ATPPPAPPPL 480 RRGSSGSAGI AAAAAAATGT GRKDRAARGR GDASSGIGSS NSSFGITVKI ERSATAPAGP 540 AAGTGSPNDQ TAAMAAALHS SATAAIAAQG QVQHQPCAIR SFVVLDDRGG LNGGGFTPGN 600 TCSTPGPYPQ DLAMLQLAHA SAASNTTDGG PTSPDLPPTT YYHPQPHPAY HALALSQGLC 660 TTPGAAAAGT VLQQPTAGTP PPVARISIAA AGAPGMLFSG LPTSTCEELM SCGSVGPMGA 720 PLAVPAVAAS VPRWASPPLP AADPSGPCKY DMTPQPVMGS SGVLLYPSGG GWELSALELM 780 AGSGGGAGGG GAGGGDGGAA AAAGGPFAVL PSPPVLLQQQ HHQYHLGLQL QAQLQAQQQQ 840 LQEQQLQLQA QLAQLHALQR ISHLHQGSEQ LNSQSQGQGS PAWMASCDTP TPQSLQQQQQ 900 QPAGAAAAPP SSSSATATAP PGLRLGPDMT MQSPPPGRIV PETPLQPPPQ AADSDLTDMW 960 LSCMLE*

Sequence ? help Back to Top

Protein Sequence Length: 967 aa Download sequence Send to blast

MEGQTYPAEL SKGLMDSDPT LPAPMETQPQ FSAEANQQGC ASPNCSAGCC VVLASGGTQG  60
GLMPDCACAR GNRFRGCKRR IWRSSELSTL VLLHSALGNK WSAIAKYLHG RSDNDCKNIF  120
YSALRSKTSQ TNRLLRTYAQ AVGPNCDDPL ARQNAYKTAK AQVAARNASL ISRAAALAPR  180
NRQNSRGGSA SDDDSDIPAD AAAAAAQAAA GLPQADAAAA AAAAAVAGAD GGEAPEDIDP  240
MDAGAYVSAL QLQQATAAAA AAAAAGSSGS GGPQDPSPSS NSNRALIRRL SAQSGNRDSS  300
MYGSGSGGGG GGGGGGGSPS IAPTFSQGTA AAAAATAAAG APLARTKSQS FRDGASEGHP  360
AGSGRQHQHQ HQQPSQPQHL HQLVLPAWAA SGRALLPPAA GHPLRQVRPR LMPFGPHPSP  420
LSVGMAATSH DSLQLASPSA AVQNGGGAAA DGVLAENYGA SASSTESLQD ATPPPAPPPL  480
RRGSSGSAGI AAAAAAATGT GRKDRAARGR GDASSGIGSS NSSFGITVKI ERSATAPAGP  540
AAGTGSPNDQ TAAMAAALHS SATAAIAAQG QVQHQPCAIR SFVVLDDRGG LNGGGFTPGN  600
TCSTPGPYPQ DLAMLQLAHA SAASNTTDGG PTSPDLPPTT YYHPQPHPAY HALALSQGLC  660
TTPGAAAAGT VLQQPTAGTP PPVARISIAA AGAPGMLFSG LPTSTCEELM SCGSVGPMGA  720
PLAVPAVAAS VPRWASPPLP AADPSGPCKY DMTPQPVMGS SGVLLYPSGG GWELSALELM  780
AGSGGGAGGG GAGGGDGGAA AAAGGPFAVL PSPPVLLQQQ HHQYHLGLQL QAQLQAQQQQ  840
LQEQQLQLQA QLAQLHALQR ISHLHQGSEQ LNSQSQGQGS PAWMASCDTP TPQSLQQQQQ  900
QPAGAAAAPP SSSSATATAP PGLRLGPDMT MQSPPPGRIV PETPLQPPPQ AADSDLTDMW  960
LSCMLE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	305	317	SGGGGGGGGGGGS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002947774.1	0.0	hypothetical protein VOLCADRAFT_87996
TrEMBL	D8TMT2	0.0	D8TMT2_VOLCA; Uncharacterized protein
STRING	XP_002947774.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9987	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	7e-10	myb domain protein 93

Link Out ? help Back to Top
Phytozome	Vocar.0009s0221.1.p