PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0008s0074.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family AP2
Protein Properties Length: 1362aa    MW: 139594 Da    PI: 6.9729
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0008s0074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.11e-134089155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         s+y+GV+w++k++rW + I        + ++++lg+f+t+eeAa++ ++ + +++g
  Vocar.0008s0074.1.p 40 SCYRGVCWHRKSKRWQSAINS------SgRHVYLGSFDTEEEAARMFDKVAIRIRG 89
                         79**************99888......44************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.55E-144098IPR016177DNA-binding domain
PfamPF008471.8E-84089IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-164197IPR001471AP2/ERF domain
PROSITE profilePS5103215.3164197IPR001471AP2/ERF domain
SMARTSM003804.2E-1441103IPR001471AP2/ERF domain
CDDcd000183.00E-144298No hitNo description
Gene3DG3DSA:1.25.10.101.5E-4773849IPR011989Armadillo-like helical
SuperFamilySSF819957.06E-510261090No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1362 aa     Download sequence    Send to blast
MPDDDILCNK TAVKEHGGAK IAAGDALPGG RVSGTRVATS CYRGVCWHRK SKRWQSAINS  60
SGRHVYLGSF DTEEEAARMF DKVAIRIRGA KAKLNFPYKD YVGPDGEFLT DPKLEQLVHA  120
AYKALLEKQQ RHRAIEDGHA AGSGGGGGSG AGAKRRRLGS AAAGLASDDS EPGDLNCSVG  180
LPLSAVPWNA GRLGWGPGPE RCAGANVGYD FGCSPGGGGG DGSDAVMHPM HGAMGRTGLW  240
GPVAGVVAPS GGHGPAEPLS PPSPTAPPAA GQCDAGMAPL TAQQPGDQRV PYHHHHQLQQ  300
QFQDQHFVPK DAIGLTPGHF GDHGCGGGLT ATATAVAGAS TGLPSAAVHN PPTPYGGTPR  360
HRAYAGLCLD LGRPEVAGGV GGGGADGGGG DGPAAAAAAV AECLIGELGG RSGSAAPNTN  420
CRLADGSDNG GGGGGSGGGC CGGGSITAVA AVVDSTARTH EPGAAAATDG GADGVRELDV  480
VSLIRQFIKG INGQLPLGME IDSLIPCADG SLLGYTLVRR VVSERLAELC SSSSNNSRSG  540
SGSAVAHAGG GSGGNHGSSG SGGVNTTALP TAATAAAASG SNRDTAGDGA DCTASGSCTC  600
LRDRTHGGSS GIGSSLPQMC GSSGNSDAAG GGGGGSSSCT AGAVAGAGIF LRGTYRSLGT  660
YSTTADAIQA CKSCLTVLME YKDELLLTSA AATAPGLRCG SGGGGGRPVV RAPLAAAPAQ  720
ARPPAPKAAS IVLSAATAAA VETDEPPERP GAVAAGVSGR QQGNLSRDCP VTEQQQQQQQ  780
PQPQQQPQQV QQVQQQQQQQ QQQQVQPPPP QQVQVQDDDA TEGQNDDHPR QLQLFVQRLI  840
HHQQQQQLQP HHHQQQLQPH HHQQQLQPHQ QQQGGRIHTH PASRYLVQSG RIVVLPREAD  900
FPEAVSAAAG IRTHSGSFIS VADDVYDSLY DADNTLSHPK RTCISRQADG SDSGGFLRSY  960
PRQVQQQGIG AVADADERQL HAVLLEPVRQ RQEISEQLPF AESRSASHVL AQLIANLLDP  1020
SRHLKSPQQQ VQAPGKAQQQ QEQHQQHQHH QQQQQQQQQQ QYQHCKQQKH CYHAQQNEEQ  1080
QQQQQQQQHQ VMRTCDRRGE CGSSEVVNDT EIVLFGGGGS GGGGGGGATA VSAAGGSPTS  1140
ALVRGGKRNG VAADDGDGSG YGRNTSGSCD STDDTFLPPP GLQRRLPPPS LHAVLPGGGG  1200
GSGGGGHNRD GGVCCPAGPR YPLHYPGRPV VVVQRANDPL ASGEIRLGGG GGDDDAGGRV  1260
DRNGNHHPAQ RHWDMGAAAI WRRHGEAAAL ASSSAAAAAA GAADGTAAAV TASAPTVLYE  1320
VADGMALTQT TTTLYGKRSP MHDQRRATSV SWWQYQQQSQ Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002954436.10.0AP2 family transcription factor
TrEMBLD8U6X00.0D8U6X0_VOLCA; AP2 family transcription factor
STRINGXP_002954436.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3683512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.12e-14AP2 family protein