PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0008s0006.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | MYB | ||||||||
Protein Properties | Length: 1686aa MW: 182516 Da PI: 8.9867 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.7 | 5.5e-13 | 92 | 156 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT....................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....................tWktIartmgkgRtlkqcksrwqk 46 r++WT+ +e+l+ av+ + + +W+ +a+ ++ gR++kqc++rw++ Vocar.0008s0006.2.p 92 RKPWTKCQHEKLIAAVEAHQKAlaaaaggglgeasdgnemriNWTVVAESVP-GRSGKQCRERWHN 156 789*****************99******************************.***********98 PP | |||||||
2 | Myb_DNA-binding | 44.4 | 3.9e-14 | 165 | 208 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg WT++Ed +++++++ +G+ W++Iar +g +Rt++q+k+rw + Vocar.0008s0006.2.p 165 RGQWTEDEDRIIARGHATWGTA-WTRIARNLG-RRTENQVKNRWST 208 89********************.*********.***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 9.466 | 87 | 158 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.6E-11 | 91 | 160 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-10 | 92 | 156 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-15 | 93 | 168 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.85E-7 | 94 | 157 | No hit | No description |
SuperFamily | SSF46689 | 5.74E-21 | 138 | 216 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.525 | 160 | 214 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-12 | 164 | 212 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-13 | 165 | 208 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.25E-10 | 168 | 210 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-15 | 169 | 211 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1686 aa Download sequence Send to blast |
MTKTVALTND PARSTRAQGW PLNLGEDGQS SAESNLNRKR RESDEDWATT TADSDDESEE 60 DSDADDDSAQ TERSPRARSN AGGSGSRSNS RRKPWTKCQH EKLIAAVEAH QKALAAAAGG 120 GLGEASDGNE MRINWTVVAE SVPGRSGKQC RERWHNICSR PNAVRGQWTE DEDRIIARGH 180 ATWGTAWTRI ARNLGRRTEN QVKNRWSTVV RATKKKSAAC STARLLGYVM CIQKGMKPAD 240 AYRTVFQDDL PTTSPGGATD QPTNPAGTDA LAAIPSTSKA DNGKQRQAVS TSGCRAGSTQ 300 AVTTPAILRT AAIPSAAVRS SMVALLRSGG GKNPPGQQPQ PQQQQQRQVP PPQVSQPPLQ 360 QQPQQQQQQR QPPQQQQQQP QQQPQQQQQQ QLLTQPQARP EPEQMPPPLE HPLPPRASQQ 420 QLILPQQQLQ QPLPAQQQQP LPPQLSSHQH QEQQQQPPLR APQQQLPPPS PQQVLQLPPQ 480 QLAHLTPQQQ QHQQSLLQQQ MLSQQHSQQQ LRMLQQPSQV PLPQHHHQHQ QALPLLQQTP 540 SQQPSTSQQH WLQQQRILPQ QPQQQQMPLR QQVLSQQHSL AQQRVLPQPQ QQLQPQTQRQ 600 QQMMMPPPQV PTTLPQRGMK LSQQQTSPPQ AVPQHPLQQQ QQQQQQQQQQ QQQQQQQQQQ 660 QQQQQQQLQT QILHPRQVMH SQQQLQPSHL QPAAQVQAPL QGSHPQHLQL PQPRQSQQLL 720 QQHMYLQQQQ QQQQQQQMPQ QQQLTQQQLL QQHMHQPPPQ QQLQQQQMQQ HMQQQQMQPQ 780 HLQHQQQLQQ QQQQLQQQQL QQQQIQQQQQ QMQQQQLQQQ QMQQQQLQQQ QMQQQHLPQQ 840 QMQQQQLQQQ QMQQQQLQQQ QMQQQHLPQQ QFQQQQFQQQ QIQQQQLQQQ QLQQQQLQHQ 900 QHLQQQLQQQ QKLQQQQKLQ EQFCNQAVHC QPLQPPKPAE PHKPPPVDST SIRVPPPYGA 960 SQQSWSSCMT SHSLSILPVT GATSVKEETV QEEKKELRDM KCEQREQEPG PEIRAPCNGR 1020 PAAMAVGYLN RRVEMATVDA IPGAFDHTAR PGATAQLNET AWVALQQQPS ALHGPLLGPA 1080 PRVVPKPADK AAAGSNGPLP VAMVQGVQGG VSSGRFELAT ATQGETATIQ LPSSNSPPPV 1140 MSAPEMAGCT SYPLTGPMFS AFKNEDLAVL ALTGATGTPT RKRLAERSCS APISEPPGQR 1200 TAPEFALLPS AAHTTPVAMA AAIVTIAASG GSDGSTSKRP RLSLEGLRCE GTAGGPVGHS 1260 AVAGALTAAA VYCRSTGSPP PASPETRPSP QSSPQRQVSD SPGMQPSPPV GGISQAPGVA 1320 GQPTTRKEST LLTSQSTAKA GTVALQPQHP ASSGQLDSLA AVQQCTAHLV SSVTAAIRQC 1380 NSETISLPTA LVRTLLNLAG GQEGHLQGNA RAAKDCKVAI AAVKATAGGS EEAEACNQDT 1440 ARATGCNSSD DADATVAVTM QGGGTKASPQ RTLQQHMRHG GNEGGAAITV LKSAASTGRA 1500 TATVASPPAK ANLAAAASTA PPSGCPAAPP AMTDSGSCVR AAHATGSGGG VGVAPAATAA 1560 AAASGSGSNP GAVGGASPMP PPPPPPPANA TGAAPAASSG GQQVPFSGPN AFGDTQIDSV 1620 DMDWLAGLRF QTSVPGAGAE GTAGLDHVVV APGSNLHVTR RMGSMPLMTC STPSESFIES 1680 VFSDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-19 | 92 | 211 | 7 | 105 | B-MYB |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25230.1 | 2e-20 | myb domain protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0008s0006.2.p |