PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0007s0289.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family ERF
Protein Properties Length: 449aa    MW: 47879.6 Da    PI: 6.6091
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0007s0289.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.2e-12181225150
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                          s+y+GV++   ++rW+A+ r    ng  k  slg f+ +eeAa+a+++++
  Vocar.0007s0289.1.p 181 SKYRGVHQTFPTKRWEAQFRR---NG--KPTSLGCFDNEEEAARAYDKMM 225
                          89****************555...54..*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-7181226IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-10181227IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-8182232IPR001471AP2/ERF domain
SMARTSM003805.7E-5182250IPR001471AP2/ERF domain
PROSITE profilePS5103212.273182244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSADLHSISA KEECGQELQA VHDVVERPSE VGPLQEASSS GQANQQIRVL GSLPGISRRY  60
SWPELIQMGG GMAVKEQLDL LQARLRQGAL LFQPTICRPR SVTIRELEYL QEVGLSVADW  120
GSHRPARNRQ AQMPSNAALR VQQRMKAVAQ HQVPVGKMGT AMKLLRAVKS KGNGSGRTYT  180
SKYRGVHQTF PTKRWEAQFR RNGKPTSLGC FDNEEEAARA YDKMMLWCEL HNAAGVKSGI  240
TNFDPTEYEK EFAWLQAITQ DELIETLRSE GRRQAAHRAM RQKREGFVES HTEEPEDPAQ  300
QQQQQQQQQH VQQQMQQQNP QLELDPAVAA ATAAAAAAAA AAAAAAATGG MQSAPALVGI  360
AAAPTDLQQQ LQQLQGIAGV GTAGAPPPEG LPVGPRVVSS FGDAGGGGGG TGRPQDGAIT  420
TSTGGAASSD GGVDPGIVLT SDEFLLDA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002956385.10.0hypothetical protein VOLCADRAFT_97414
TrEMBLD8UCP70.0D8UCP7_VOLCA; Uncharacterized protein
STRINGXP_002956385.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP27461414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.12e-09target of early activation tagged (EAT) 3