PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0006s0455.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C3H
Protein Properties Length: 331aa    MW: 34082.4 Da    PI: 8.9487
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0006s0455.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.1e-12121144326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          + lC ff rtGtC yGdrCkF H+
  Vocar.0006s0455.1.p 121 RQLCTFFIRTGTCAYGDRCKFKHP 144
                          78*********************9 PP
2zf-CCCH30.75.3e-10163187327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C ++++ G+C +G++CkF+H++
  Vocar.0006s0455.1.p 163 EPDCAHYLKKGWCAFGPTCKFNHPE 187
                          689********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.929118146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-7119146IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6119145IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9121144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-8122145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77160188IPR000571Zinc finger, CCCH-type
SMARTSM003560.032161187IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7163187IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5164187IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSRNAEAVSE APQQLGVYAH QGTGFMSSLT GAQHHSNMGN YSPSLELLQG IQVPLGSGPG  60
QGQAQQQSAG PTGGISFSPL GAGLRSSGPF STGGPNIGSR GVDAKKTEPT TTTTATTTEE  120
RQLCTFFIRT GTCAYGDRCK FKHPLDRPPP QLNTRGYPIR ADEPDCAHYL KKGWCAFGPT  180
CKFNHPEMQP SILNSYGLSQ PPTAYVSLPT TTFPSPAVYS VPPAVPTLYY LPPGMGPNQL  240
AGSTVSLLPS TVGTVAATQA SQLAFTQQSA LTAAVPGQMY RQPAPAAPYG GLGGAINGGV  300
GGAMGNQVSV LQEAFQGLTL GRAGGLGPRK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002947962.10.0hypothetical protein VOLCADRAFT_103744
TrEMBLD8TN940.0D8TN94_VOLCA; Uncharacterized protein
STRINGXP_002947962.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP623277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-18zinc finger protein 1