PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0006s0441.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB
Protein Properties Length: 1075aa    MW: 112976 Da    PI: 8.9664
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0006s0441.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.9e-15950245
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                         g+WT+eEd llv++ + +G++ W+ I+++++ gR + +c  rw+
  Vocar.0006s0441.1.p  9 GAWTEEEDILLVEYQAVYGNK-WSQISKHIP-GRNGQSCAQRWR 50
                         89*******************.*********.***********8 PP
2Myb_DNA-binding513.4e-1659105148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          r +WT+eEd +l + v++ G g W+t+ar+++ gRt+ qc  rw+ +l
  Vocar.0006s0441.1.p  59 REKWTPEEDSRLTRFVQEIGVGKWATVARHLP-GRTDQQCMGRWRRHL 105
                          789*****************************.************986 PP
3Myb_DNA-binding41.53.2e-13111152144
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                          +++WT+eEd +l+ + +++G+  W+ Ia+++  +Rt+ qc+ rw
  Vocar.0006s0441.1.p 111 KDAWTAEEDARLYALYQEYGSS-WSMIAKCIA-NRTPQQCRGRW 152
                          679*****************99.*********.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.703153IPR017930Myb domain
SuperFamilySSF466891.24E-14557IPR009057Homeodomain-like
SMARTSM007172.0E-14755IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-18962IPR009057Homeodomain-like
CDDcd001673.25E-111050No hitNo description
PfamPF139216.8E-181170No hitNo description
PROSITE profilePS5129424.86854109IPR017930Myb domain
SuperFamilySSF466891.87E-2856152IPR009057Homeodomain-like
SMARTSM007172.7E-1558107IPR001005SANT/Myb domain
CDDcd001672.83E-1361105No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2263111IPR009057Homeodomain-like
PROSITE profilePS5129416.266110160IPR017930Myb domain
SMARTSM007172.7E-12110158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-17112157IPR009057Homeodomain-like
CDDcd001672.36E-10113152No hitNo description
PfamPF139211.5E-13114163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1075 aa     Download sequence    Send to blast
MKSAPTKTGA WTEEEDILLV EYQAVYGNKW SQISKHIPGR NGQSCAQRWR HKVNPNITRE  60
KWTPEEDSRL TRFVQEIGVG KWATVARHLP GRTDQQCMGR WRRHLDPNIR KDAWTAEEDA  120
RLYALYQEYG SSWSMIAKCI ANRTPQQCRG RWCILTSSKS KASLPAAPET PHQEHATHGQ  180
GSQATDTETT RRGRVQPHDC PSTVIGDATT EMPAMPASAL LLTQGGGEFL QPPTVQQTRL  240
ARLRVRNTMV GIDVSGIGGL LRQDRRPAVL QDPGSVGALM YAGKAKSQSQ TGVDQQDDLV  300
GVDSTQRGRL LLGTRVLSFR RRLRSTQRRP RGRLTAVILP SSGGTPKGRA SKPEPLASIA  360
VATVAAVDPL LSPGHHSPVI TDDVIVGEHV PFRPSTNPCG AKECRGKDYD GQGVDSGNTD  420
GRAPHPCRAS KGAGTNAVVS TCERPTVSTG SRRGLASTGC RRQRPAGRSE EAPSGDAVLH  480
MSSRKTRSGR CYPLATMPAI MSATLSLQRK ADDGGPGARA YTEAPGNAAD TTGGCIGGLD  540
GALAASVNSL AEMKEQQERA DVDTFRLPGG LAGEAGVSIP GYVFTAQASN GGPTIAAGFR  600
QQAIAGGSAD TSLGLPGELF GEGGTPPRGD QLLDWQEVIG SPPTSSFLAF VEAGLLQTPT  660
GALGPSPGPE LLCAPVPPGM PKVTPGFSND WSDVPALSWT ELQACHPSFG IIARPPTSSA  720
QGTPDNSRPA LRPVPDNCRV GTTPRRDMYV RSTGQGGEPS STPAAVRYPS SPMVHLGESS  780
TEDEGQGDTL SMPPSPCGPN QGPKQLNGCR TDRTACGHSR QARAGTAAPD LPPSRHKAQT  840
SAANGKGDCT IPDFCSPADK HHMAISGSQL KSQERVQGLP THPPTAYHGT GFASNRLMAD  900
QLEQLKPATL MADHTTAPTL ASVPPCPVVA MDGTSPHLYL GVQLSIARPS LTPGQLPLPP  960
ALASALMPAM IQQAHKPSSV CVGKLQPRPP VANQELPGLA APGGSTGGVS YVSAPGSRSV  1020
LVAPTTALGL GSTGQGAVFP RLILPKQPAA GTMRSLFPVL SLNTHQDCNQ NVTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-3391523151MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-3391523151MYB PROTO-ONCOGENE PROTEIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3D4562e-78A0A2K3D456_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-33myb domain protein 3r-5