PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0006s0215.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C3H
Protein Properties Length: 363aa    MW: 39355.6 Da    PI: 6.7634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0006s0215.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.1e-13209234126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          y    C+++ +tG+C+yGd+CkF+H+
  Vocar.0006s0215.1.p 209 YQPDVCKDYKETGYCSYGDTCKFMHD 234
                          66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-9207239IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-8208235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.169208236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-12209239IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10209234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.0E-8276337IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.65E-10291339No hitNo description
CDDcd001621.13E-5292337No hitNo description
SMARTSM001846.8E-5292333IPR001841Zinc finger, RING-type
PROSITE profilePS500899.996292333IPR001841Zinc finger, RING-type
PROSITE patternPS005180311320IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MADRNEEHAG VPPAAAPDNS AVVTPSAAAV ASAAGTEGLF RPKKGGANFR KRGAAGTSAA  60
TGTAGPTLAP DADDGEGDEG GVVRKAKQLR TGAGGDTKLQ FTTAKDDKPE LMVQYAGSKA  120
LQDTKDALAS RILETETEYD RDARAQREKV LKQATEGVAD DGTYKGMNSY IDYRKGFRRE  180
HTVAAEKGTG AHGPLRGNAY VRVSARFDYQ PDVCKDYKET GYCSYGDTCK FMHDRGDYKS  240
GWELDRMWEE EQKRKAEALA KGWNPDADGE DDADADAEAA AAARDEELPF ACFVCREPWE  300
SCKGPPVVTR CRHYFCEKCA LKQSAKSTKC AVCGQSTQGI FNIAHDILKR QKRQEEGRRA  360
QR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M5e-5411135496320RING finger protein 113A
5z58_M5e-5411135496320RING finger protein 113A
6ff4_t5e-5411135496320RING finger protein 113A
6ff7_t5e-5411135496320RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002947853.10.0hypothetical protein VOLCADRAFT_79853
SwissprotQ8GX841e-90C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLD8TNH70.0D8TNH7_VOLCA; Uncharacterized protein
STRINGXP_002947853.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP14831616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.17e-89C3H family protein