PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0006s0215.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | C3H | ||||||||
Protein Properties | Length: 363aa MW: 39355.6 Da PI: 6.7634 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.5 | 9.1e-13 | 209 | 234 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y C+++ +tG+C+yGd+CkF+H+ Vocar.0006s0215.1.p 209 YQPDVCKDYKETGYCSYGDTCKFMHD 234 66789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.75E-9 | 207 | 239 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8E-8 | 208 | 235 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.169 | 208 | 236 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-12 | 209 | 239 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-10 | 209 | 234 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 1.0E-8 | 276 | 337 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 5.65E-10 | 291 | 339 | No hit | No description |
CDD | cd00162 | 1.13E-5 | 292 | 337 | No hit | No description |
SMART | SM00184 | 6.8E-5 | 292 | 333 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 9.996 | 292 | 333 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 311 | 320 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MADRNEEHAG VPPAAAPDNS AVVTPSAAAV ASAAGTEGLF RPKKGGANFR KRGAAGTSAA 60 TGTAGPTLAP DADDGEGDEG GVVRKAKQLR TGAGGDTKLQ FTTAKDDKPE LMVQYAGSKA 120 LQDTKDALAS RILETETEYD RDARAQREKV LKQATEGVAD DGTYKGMNSY IDYRKGFRRE 180 HTVAAEKGTG AHGPLRGNAY VRVSARFDYQ PDVCKDYKET GYCSYGDTCK FMHDRGDYKS 240 GWELDRMWEE EQKRKAEALA KGWNPDADGE DDADADAEAA AAARDEELPF ACFVCREPWE 300 SCKGPPVVTR CRHYFCEKCA LKQSAKSTKC AVCGQSTQGI FNIAHDILKR QKRQEEGRRA 360 QR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 5e-54 | 111 | 354 | 96 | 320 | RING finger protein 113A |
5z58_M | 5e-54 | 111 | 354 | 96 | 320 | RING finger protein 113A |
6ff4_t | 5e-54 | 111 | 354 | 96 | 320 | RING finger protein 113A |
6ff7_t | 5e-54 | 111 | 354 | 96 | 320 | RING finger protein 113A |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002947853.1 | 0.0 | hypothetical protein VOLCADRAFT_79853 | ||||
Swissprot | Q8GX84 | 1e-90 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | D8TNH7 | 0.0 | D8TNH7_VOLCA; Uncharacterized protein | ||||
STRING | XP_002947853.1 | 0.0 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1483 | 16 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 7e-89 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0006s0215.1.p |