PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0005s0367.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

SBP

Protein Properties

Length: 1916aa MW: 198088 Da PI: 6.3355

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0005s0367.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	81.1	1.6e-25	62	137	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +C+v+gC++dls+ y+r++++C+ h k+pv +v+g+ rfCqqCsrfh+++efD +r+Cr+ L++ +r + Vocar.0005s0367.1.p 62 ICRVPGCTSDLSRDLAYFRKYRICREHLKSPVLVVEGVPSRFCQQCSRFHHVKEFDGPQRTCRSMLERLRMKRNNT 137 5*****************************************************************9988887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.9E-26	56	124	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	22.093	60	137	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.09E-23	62	137	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.1E-24	63	135	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS50297	9.145	1377	1421	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1916 aa Download sequence Send to blast
MDRNDDDAHT DWSPQEVAWD GLTLTVQNSR GTDSNVPTID KYYIKGRGPA IAGSSGGTPT 60 SICRVPGCTS DLSRDLAYFR KYRICREHLK SPVLVVEGVP SRFCQQCSRF HHVKEFDGPQ 120 RTCRSMLERL RMKRNNTKSQ AAARNGRVKN DTRPTDASLR GGSSSRSNST GKDAEPIKDL 180 APGQPQQHSP AGAAPTDSCE GVESITALAT GIAVPPLLNT ASSAATATAT SFPSHAITQN 240 PQQQQGVALD FGTPLQYRER QAVLLQGQGG DCDPRVVSLP ACAPRGPMDA LPPGGGNLSE 300 RQLYISQGAG PGQQPNRILA GGSSAAQFRS SRIAEYDIGD RRDVPDSRPP MQQYRDAPYG 360 RSTGVDGSIG WSSSSGGSLS AAALAGMVPR RPAPPQPEPA QRPSERDVHR QLGNGGREDP 420 LLLQLAMMTR GPPDRVGVPK HEQQALDLGP PPLPVNPVLN LGRRVDLSLE LQLQDIYREM 480 AISDTSAPMQ PRQEDPLLRS LSSGAPLGHP NSSNTVTSTA ALLPQDPLLP LGHRAAAPLP 540 QPSAGHAAIR FGHQQPPMMG TAASALLGPQ QQQQQRNQQC NQQCQQAFSD LSTALRLAAV 600 DGMNVDTDHM RLQTSLAARN AQAPAPSGSA ASAYGMGAGV GVSDLRLNLH SQVQQQHHLR 660 QQQQQLEQRQ QQQQQQQQLE RQMFPGVAAG GAADSVVLVR HHDASRAVMA PRTVYGSCDG 720 AFAAGAVSDG IYGSMYGGGS SAAMAMAAIP EAADSSLVRW SSNDIDAALD MLMEEAGSGA 780 VYHTGNNTAS LERICFKLNN LHPQDLPPDL MGAMGSWLAA ARTEVVQGAV RPGCIMLVLD 840 VYVNGPDPAD ELMEEGSDGG DTANDDGRDG AGGSDAATSF SLGDPLQSGD SSTGLAGGKG 900 RVLGGLVLSG HDLAHLEAAA AAAGGEVLQP IPDLAYGSSP LNVVGNQGGI SSEASTAHLS 960 AYVMHRGNVR AATACYKKLL GPRAVQSMAV SIRHEVLTIS SPARGRYVTD VRGTMAGLDT 1020 PLLLSVSPLA VVAGTPAVVR VIGSHLAGPR RRPHVRCQGA HVPCSVTVAQ DSAAAATAGN 1080 AGGAAAAGGT FCDGDAFQKV SPYDLPALMG QLLASTLPGS HRAEAVAECT NVNLAFNAPD 1140 AGLLMVEWEA DCSNGSGGIS LSEWLPLLSV PDIAMASEIN ELERARDGND KRVRPFLDDL 1200 GLVLDYVTRI SHGLLMPIST LMTTGEDASG EDAAGGGSDV GGGRGGGDGG GGGAATLPSS 1260 GDFASWQSRS GGGGADQRSS PATAEGLPDS SGGVNPFRLE HDSRTELMTK PRLSKRHYNR 1320 VAALTPALLA FAADSGMLAV MSWLMDFMLE HVYFGDLAAV FQSVESVGDG AMVLPLLHRT 1380 VRSGKPDAVQ LLLHRAASHN MACNLAQPAG PFGITPLHLA ALQPLGSGML QACGCADPRV 1440 AELWAMLPDA AGRTPAMYLR RQLENSSHSE STAMALRAAA EAVVTVTADR TTSRDSASGS 1500 ASATAYNSWA SEEPTDASVI AAGTAVPAAA AASFTGRTLS AAEAPTPPLP TVAAAVGYER 1560 RDGVGSDEAG AGMGDSAEEF RERQEFRRRG GRLADLGAEA VMETMTAPED AAPRAVRSDL 1620 GSAVVRGGRA DMTAEAPAAA AAQPRVGTTQ QGNGWAPLQV LTRIKEGCSG AATMLTWLRA 1680 RGPSTAGAAA APAESGSGLS GPLPSAGYGL QSVAAATTAD SHSVQTSPKA NAALKTSSCG 1740 DSTEDWVKMK LSMHAREEKQ QDATVQQRTE PRRGGRAAGG SGSGGVHGNG GGEGDDLQGQ 1800 ERGLKLGKWS LTAGNSGAAS AAPREAKGAV GFAFREVVGF VVSTAAATAA ARAAWLPDAV 1860 RGAAAARVGR GEGLDGRFLG RPMLVTLLMS AIAVAVGVIV ALVSRFAGQD SLVDS*

Sequence ? help Back to Top

Protein Sequence Length: 1916 aa Download sequence Send to blast

MDRNDDDAHT DWSPQEVAWD GLTLTVQNSR GTDSNVPTID KYYIKGRGPA IAGSSGGTPT  60
SICRVPGCTS DLSRDLAYFR KYRICREHLK SPVLVVEGVP SRFCQQCSRF HHVKEFDGPQ  120
RTCRSMLERL RMKRNNTKSQ AAARNGRVKN DTRPTDASLR GGSSSRSNST GKDAEPIKDL  180
APGQPQQHSP AGAAPTDSCE GVESITALAT GIAVPPLLNT ASSAATATAT SFPSHAITQN  240
PQQQQGVALD FGTPLQYRER QAVLLQGQGG DCDPRVVSLP ACAPRGPMDA LPPGGGNLSE  300
RQLYISQGAG PGQQPNRILA GGSSAAQFRS SRIAEYDIGD RRDVPDSRPP MQQYRDAPYG  360
RSTGVDGSIG WSSSSGGSLS AAALAGMVPR RPAPPQPEPA QRPSERDVHR QLGNGGREDP  420
LLLQLAMMTR GPPDRVGVPK HEQQALDLGP PPLPVNPVLN LGRRVDLSLE LQLQDIYREM  480
AISDTSAPMQ PRQEDPLLRS LSSGAPLGHP NSSNTVTSTA ALLPQDPLLP LGHRAAAPLP  540
QPSAGHAAIR FGHQQPPMMG TAASALLGPQ QQQQQRNQQC NQQCQQAFSD LSTALRLAAV  600
DGMNVDTDHM RLQTSLAARN AQAPAPSGSA ASAYGMGAGV GVSDLRLNLH SQVQQQHHLR  660
QQQQQLEQRQ QQQQQQQQLE RQMFPGVAAG GAADSVVLVR HHDASRAVMA PRTVYGSCDG  720
AFAAGAVSDG IYGSMYGGGS SAAMAMAAIP EAADSSLVRW SSNDIDAALD MLMEEAGSGA  780
VYHTGNNTAS LERICFKLNN LHPQDLPPDL MGAMGSWLAA ARTEVVQGAV RPGCIMLVLD  840
VYVNGPDPAD ELMEEGSDGG DTANDDGRDG AGGSDAATSF SLGDPLQSGD SSTGLAGGKG  900
RVLGGLVLSG HDLAHLEAAA AAAGGEVLQP IPDLAYGSSP LNVVGNQGGI SSEASTAHLS  960
AYVMHRGNVR AATACYKKLL GPRAVQSMAV SIRHEVLTIS SPARGRYVTD VRGTMAGLDT  1020
PLLLSVSPLA VVAGTPAVVR VIGSHLAGPR RRPHVRCQGA HVPCSVTVAQ DSAAAATAGN  1080
AGGAAAAGGT FCDGDAFQKV SPYDLPALMG QLLASTLPGS HRAEAVAECT NVNLAFNAPD  1140
AGLLMVEWEA DCSNGSGGIS LSEWLPLLSV PDIAMASEIN ELERARDGND KRVRPFLDDL  1200
GLVLDYVTRI SHGLLMPIST LMTTGEDASG EDAAGGGSDV GGGRGGGDGG GGGAATLPSS  1260
GDFASWQSRS GGGGADQRSS PATAEGLPDS SGGVNPFRLE HDSRTELMTK PRLSKRHYNR  1320
VAALTPALLA FAADSGMLAV MSWLMDFMLE HVYFGDLAAV FQSVESVGDG AMVLPLLHRT  1380
VRSGKPDAVQ LLLHRAASHN MACNLAQPAG PFGITPLHLA ALQPLGSGML QACGCADPRV  1440
AELWAMLPDA AGRTPAMYLR RQLENSSHSE STAMALRAAA EAVVTVTADR TTSRDSASGS  1500
ASATAYNSWA SEEPTDASVI AAGTAVPAAA AASFTGRTLS AAEAPTPPLP TVAAAVGYER  1560
RDGVGSDEAG AGMGDSAEEF RERQEFRRRG GRLADLGAEA VMETMTAPED AAPRAVRSDL  1620
GSAVVRGGRA DMTAEAPAAA AAQPRVGTTQ QGNGWAPLQV LTRIKEGCSG AATMLTWLRA  1680
RGPSTAGAAA APAESGSGLS GPLPSAGYGL QSVAAATTAD SHSVQTSPKA NAALKTSSCG  1740
DSTEDWVKMK LSMHAREEKQ QDATVQQRTE PRRGGRAAGG SGSGGVHGNG GGEGDDLQGQ  1800
ERGLKLGKWS LTAGNSGAAS AAPREAKGAV GFAFREVVGF VVSTAAATAA ARAAWLPDAV  1860
RGAAAARVGR GEGLDGRFLG RPMLVTLLMS AIAVAVGVIV ALVSRFAGQD SLVDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-16	53	127	1	75	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002955878.1	0.0	hypothetical protein VOLCADRAFT_96760
TrEMBL	D8UAZ3	0.0	D8UAZ3_VOLCA; Uncharacterized protein
STRING	XP_002955878.1	0.0	(Volvox carteri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	1e-18	squamosa promoter binding protein-like 5

Link Out ? help Back to Top
Phytozome	Vocar.0005s0367.1.p