PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0005s0272.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB_related
Protein Properties Length: 305aa    MW: 31863.2 Da    PI: 10.2158
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0005s0272.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73e-14114158347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ l++ + +++G+g+W++Iar +   Rt+ q+ s+ qky
  Vocar.0005s0272.1.p 114 PWTEEEHRLFLLGLAKFGKGDWRSIARNFVVSRTPTQVASHAQKY 158
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-71072IPR009057Homeodomain-like
SMARTSM007170.0251768IPR001005SANT/Myb domain
CDDcd001675.08E-62165No hitNo description
PROSITE profilePS500905.0642166IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.3E-44265IPR009057Homeodomain-like
PROSITE profilePS5129419.026107163IPR017930Myb domain
SuperFamilySSF466891.86E-16109164IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17111161IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.8E-12111157IPR009057Homeodomain-like
SMARTSM007172.0E-12111161IPR001005SANT/Myb domain
CDDcd001678.94E-11114159No hitNo description
PfamPF002495.9E-12114158IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MTASFSISVD YVQPRGVATF WRLEENKVFE VALAKHFLDV DRYERIAAYL PNKTASDVQK  60
RFRELEDDLR RIEEDHDSAS AQSAPSPAPR IDENPAKKPK ADVPANGDRR KGVPWTEEEH  120
RLFLLGLAKF GKGDWRSIAR NFVVSRTPTQ VASHAQKYFI RLNSLNKKDK RRASIHDITS  180
PTLPASAPNA NPTTGILPNG AAGSTAAAAA AAAAAAAAAV VKAPSAASAA PSPVPSSPAP  240
PPPAAPLVSS PAQSAAAAMA AAAAAAAAST SSVFAQLAMH GMSIPQSGMV PPMAMPSAPY  300
MVQV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002954068.10.0hypothetical protein VOLCADRAFT_106244
TrEMBLD8U6340.0D8U634_VOLCA; Uncharacterized protein
STRINGXP_002954068.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.17e-33MYB family protein