PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0003s0383.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C2H2
Protein Properties Length: 856aa    MW: 90213.8 Da    PI: 4.5801
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0003s0383.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05319343123
                          EEETTTTEEESSHHHHHHHHHH..T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                          ++C  C+k+F++  +L++H r+  H
  Vocar.0003s0383.1.p 319 FECVVCDKVFRSEKQLRNHERSkkH 343
                          89*****************998666 PP
2zf-C2H215.54.8e-05828847322
                          ETTTTEEESSHHHHHHHHHH CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirt 22 
                          C+ Cg+ F+++ +L +Hi  
  Vocar.0003s0383.1.p 828 CTVCGRFFPTRNQLFKHIAE 847
                          *****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1107.4E-30691IPR001623DnaJ domain
SuperFamilySSF465653.53E-27895IPR001623DnaJ domain
SMARTSM002713.8E-27968IPR001623DnaJ domain
CDDcd062573.56E-231065IPR001623DnaJ domain
PROSITE profilePS5007620.4941076IPR001623DnaJ domain
PfamPF002261.8E-251173IPR001623DnaJ domain
PRINTSPR006258.8E-181230IPR001623DnaJ domain
PRINTSPR006258.8E-183045IPR001623DnaJ domain
PRINTSPR006258.8E-184868IPR001623DnaJ domain
PROSITE patternPS0063605372IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.83E-13307361No hitNo description
SMARTSM004510.0031316350IPR003604Zinc finger, U1-type
SMARTSM003550.0032319343IPR015880Zinc finger, C2H2-like
PfamPF121711.2E-10319343IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.408319348IPR007087Zinc finger, C2H2
PROSITE patternPS000280321343IPR007087Zinc finger, C2H2
SMARTSM003550.31826850IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307826855IPR007087Zinc finger, C2H2
PROSITE patternPS000280828850IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MAPAAPKQRC LYEVLEVSRD ADEDSIKKAY RKQALMWHPD KNAHRAEEAA EKFKEIQNAY  60
EILSDKHERA WYDDHRDQIL RSGERHQAGG GGGGFEGSSG KPPEDEELFS FFTSSCYSGY  120
GDGPKGFYGV YEAVFAKLAK QEQEAWERRD AANADSDDDS AGGSSAPTFP GFGTSQSDTA  180
TVTAFYARWG SYTTCRNFAW ADLYNPAAAP HRQVRRRMEE ENAKARKKAR REWIDAVREL  240
VAFVKKRDKR VVRAQAEEAA RRAAREAEEA ERRRVEREAR LARAAEYEDA DWIRSSEARH  300
HPGGDEEEEE EDAEEEEVFE CVVCDKVFRS EKQLRNHERS KKHAEALAAL RALLEEEEEA  360
ALGEGVGGGD GDGDGDVGLM FNAAAHSAAA AAAGGGGGSS SSSKKKKKSK KRQAQMAAAR  420
SSPATTTTTA TVTAAGAAGA AGAPAAAGGR PTEEKEPPSP LRGRAAAAAA TASKSHANSK  480
GGRRGRAPDL QQEEDQQEEG GGDDKGRDEE EEEEEEEDED VLLARMMAAH ARVRDGDGGV  540
GTSGGRQRRQ QQEEEEEEEE GKEEEEDGEG RGVQGADEAE EAGEEPSGTS GRGARGYEDG  600
GDGGGDDDEG ESMHGTQEED DEEEDGDEED EDAMLARMLR SQRATAASGR GRGGGGGCGN  660
GRGRGRGHGV PGVGSGGTVA NAQATVAPPA CAVLDVDGDV DGDGDAEDGE AEGGDEAGQD  720
SNNDTRVGGS AAVSSSPGPS ASKQKSQKKP QGSGSGRAAA TSAAAAAVGT GRNRRGDAAA  780
AAAAAAVPAV DDDADEDDNP LSKRDKRKQK LAARKAAASA PGPGQLGCTV CGRFFPTRNQ  840
LFKHIAETGH AALRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lgw_A5e-201096393DnaJ homolog subfamily B member 2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP443077
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.13e-48DNAJ heat shock N-terminal domain-containing protein