PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0003s0247.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family GATA
Protein Properties Length: 365aa    MW: 39326.3 Da    PI: 6.4169
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0003s0247.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.8e-17295325131
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyr 31 
                          C+ Cg+t+Tp+WR+gp g+ktLCnaCG++y 
  Vocar.0003s0247.1.p 295 CVECGATSTPQWREGPMGPKTLCNACGVRYV 325
                          *****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103818.7829153IPR001025Bromo adjacent homology (BAH) domain
CDDcd043709.63E-1829153No hitNo description
SMARTSM004393.1E-829153IPR001025Bromo adjacent homology (BAH) domain
PfamPF014264.7E-1530152IPR001025Bromo adjacent homology (BAH) domain
SuperFamilySSF577165.7E-13287328No hitNo description
PROSITE profilePS5011412.861289324IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-12289340IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14292328IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.59E-11294346No hitNo description
PfamPF003209.6E-15295324IPR000679Zinc finger, GATA-type
PROSITE patternPS003440295320IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MTLQLFVWAG HGEVQENRIH YNSFTLNDQT YHVGDCVYLY PEDEQFPPYI ARILAAFVDR  60
NVQSGADPHC IEVKWFERRV NLEPSTKGIE ESEREVFELE DTDINPIGCI SGKCRIVKAA  120
NYEEAFSRYG NTPGWFFCRG YFQQSSNSFV AYTPEEMAAD DIRPSGLSNG LLGVPAAAAA  180
AAVAGGVGPH RQRGPPGSGG QQTTGQQQQS LSDGSARGAA HGQPAVHHEL PLPSALADNN  240
GAGGAAAAAA DDNVDDGSDD PGPPPRRQQQ QQQHNPPPAQ QQPASKRQKM TGRTCVECGA  300
TSTPQWREGP MGPKTLCNAC GVRYVRSQQK AAGQKRTAGG QKNGQGRPQE PNPPRAQQQQ  360
QQPQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150GGB44e-92A0A150GGB4_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2201430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.15e-13GATA transcription factor 9