PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0003s0172.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

SBP

Protein Properties

Length: 1872aa MW: 191774 Da PI: 6.5807

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0003s0172.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	78.2	1.3e-24	153	228	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +C+v gC a l+ +k+y+ r +vCe h +a++++v+g+ rfCqqC++f + ef +k+sC L++hn+r r k Vocar.0003s0172.1.p 153 VCEVVGCGASLEGLKRYYVRMRVCERHLHAQAIVVNGVVSRFCQQCAKFQFVGEFAGNKKSCIATLERHNARHRAK 228 6***********************************************************************9965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.3E-22	149	214	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	21.674	151	228	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.75E-23	153	229	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.8E-25	154	227	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1872 aa Download sequence Send to blast
MAVSCRRDDA DVASLTKARS FPHCIDLPQL QQLACVLGFV PASAEAVDEL RIWTWTFRDA 60 CLLTRRVEEE ARAEEAWALQ DYEWDPIACV AHKKRILASG EAADVAPSPL AHSFPDGALS 120 GHFFQPTPAE NPKLSSLPVL ESVDRNDAEH ATVCEVVGCG ASLEGLKRYY VRMRVCERHL 180 HAQAIVVNGV VSRFCQQCAK FQFVGEFAGN KKSCIATLER HNARHRAKVL ARMQELNDGE 240 SDSAQTGGRS SRAKAKTNSR RKGCKAAAAA VAAAASASTS VRAGSASASA DRTERANSGT 300 SGAATMDGFW MTSAVAATQA AGHGRGSAAN LVDQRAQRSL SPGVPVLPSE VATPSKPASP 360 HPPKGVWDGA SGALEELLLR PLVTTGGSGV VSTSERIALP PPLVCGGGGP FITPQQQQLL 420 LSLPKGAGVP SSWSQQQYDV QVALAAVQNQ VIMEGVSLGV HTPAMTQAGH CMEVAPSGMY 480 GTGYRANGAV PGAWNHPPCA VTARTDIHAP SGQPSFAAAA ATAPAPGPAA AAAAAASGGS 540 APSPSSAPYT SGSDVSAGGK ASQGTARQAL HAVGGGGASS AGNGSHGFPA ETTKSRGSRQ 600 SEAEPCGSTG RIAMNAASPA YSANEGVSAT RVSASGDAFG TAAGSGGAGD VIAPPQPGDV 660 AARISSIMQE LCPLIEQFKQ EVAHGPMNPH DNVLTAAAPS SGTGAGVAVA QGMGAAPVAG 720 SYTPGPSESL APVMDTVMAV MQQASQLAAS LKPPSTVAKL PWTVTSGGPD TQRQLAASGS 780 MVPEPPVLGG LQGFDQSQAH ASSLAAPLPQ LSQPPPQQQQ RPHPPLMPMP QLLQPGWRPL 840 ASHPGVVVNE AAVQQAACNV PTASSGPLSA TVSFPAPPAP GPGALWTAAP APATSLASSS 900 AATSQPPAGH IIFSNYAGAA AAADTAIERS AMGGASQLLQ QPHLPLTGAG FGNDPVPQGA 960 KDDDSSEDDE MFQQLLTLLQ DEAGDACTMQ QQQQEEQRGI ASTVHQAVMA HQQTVQAMPY 1020 GHAPMSPFYW PSVAAAAPPH PQAPSHPYPP PPLPPQLEPH PPMPSAPSWL AAPAVPRYVE 1080 EPDDVDPREL TRVSLKAMNV LPHELPNNLR ANLRRWLKEA RAEALQATLR PGCLQLVVDV 1140 LRQPSPSQEL SSALIPANDA DQAAADVFRV LGQRLRDTYV QVDRRVLQMR VGERPVVLSW 1200 EEAAEEGGLD DSKYPELTGC NAAAVCAGSQ ATLQLTGRYL SQPRIKVFAR LRGHDLPTTL 1260 LPPEAQPATT ASGDGGGDVS SLRLIVSVPP RTVGLMAVEV GVGHLLGDWW HVLVLPHGCE 1320 GAAEEIRRLQ AATEAAVQQR EDQGRRSASA ADGAAGDAAG VDAQAACRAS RRLVRDMASV 1380 LEVFAAAAAA DASAAAVAAM TRSSSSSGGG SATPDGAGGD AAPTGANSPP SGARCPLPNC 1440 GSSHVSRSDA SLTAISAASW SSGGRTDTLM STNAGSTVGS FMTTSSASAF MPAGMAPGQV 1500 HVPGLPVAQH TARHPAAAAA AGSPAAVTAA TAAAAAAAAV LPIVLLPPPP SAVMRQALIR 1560 AARLLRYAVA RGMPYLTSLL LTAVNRLARI QPEPQPQPQL PIHQPQAQTV QVGSAAAAAP 1620 APQPTSSGPS RLEVLAAAGV DLQELLRLAV LSGSAATVDQ LTGFAARVLG SPLRLDLPQG 1680 PGGLSALHLA ALLSDGGALA CHLLATQPWA AWQWLCLGWK PQLEAASKGR DSQQPQPREG 1740 PPQGASPSLA AASVNTNGVV EAKKELVRGD EDEEASDEED GEVGWHWTPL PPRPLSLTPG 1800 QLSVMLGNHV TVRKAVSELM TTTNSGSTGV CVLRRGPAMT AALVTALEAW GRTGVTLLQT 1860 LCAQLAQQKL E*

Sequence ? help Back to Top

Protein Sequence Length: 1872 aa Download sequence Send to blast

MAVSCRRDDA DVASLTKARS FPHCIDLPQL QQLACVLGFV PASAEAVDEL RIWTWTFRDA  60
CLLTRRVEEE ARAEEAWALQ DYEWDPIACV AHKKRILASG EAADVAPSPL AHSFPDGALS  120
GHFFQPTPAE NPKLSSLPVL ESVDRNDAEH ATVCEVVGCG ASLEGLKRYY VRMRVCERHL  180
HAQAIVVNGV VSRFCQQCAK FQFVGEFAGN KKSCIATLER HNARHRAKVL ARMQELNDGE  240
SDSAQTGGRS SRAKAKTNSR RKGCKAAAAA VAAAASASTS VRAGSASASA DRTERANSGT  300
SGAATMDGFW MTSAVAATQA AGHGRGSAAN LVDQRAQRSL SPGVPVLPSE VATPSKPASP  360
HPPKGVWDGA SGALEELLLR PLVTTGGSGV VSTSERIALP PPLVCGGGGP FITPQQQQLL  420
LSLPKGAGVP SSWSQQQYDV QVALAAVQNQ VIMEGVSLGV HTPAMTQAGH CMEVAPSGMY  480
GTGYRANGAV PGAWNHPPCA VTARTDIHAP SGQPSFAAAA ATAPAPGPAA AAAAAASGGS  540
APSPSSAPYT SGSDVSAGGK ASQGTARQAL HAVGGGGASS AGNGSHGFPA ETTKSRGSRQ  600
SEAEPCGSTG RIAMNAASPA YSANEGVSAT RVSASGDAFG TAAGSGGAGD VIAPPQPGDV  660
AARISSIMQE LCPLIEQFKQ EVAHGPMNPH DNVLTAAAPS SGTGAGVAVA QGMGAAPVAG  720
SYTPGPSESL APVMDTVMAV MQQASQLAAS LKPPSTVAKL PWTVTSGGPD TQRQLAASGS  780
MVPEPPVLGG LQGFDQSQAH ASSLAAPLPQ LSQPPPQQQQ RPHPPLMPMP QLLQPGWRPL  840
ASHPGVVVNE AAVQQAACNV PTASSGPLSA TVSFPAPPAP GPGALWTAAP APATSLASSS  900
AATSQPPAGH IIFSNYAGAA AAADTAIERS AMGGASQLLQ QPHLPLTGAG FGNDPVPQGA  960
KDDDSSEDDE MFQQLLTLLQ DEAGDACTMQ QQQQEEQRGI ASTVHQAVMA HQQTVQAMPY  1020
GHAPMSPFYW PSVAAAAPPH PQAPSHPYPP PPLPPQLEPH PPMPSAPSWL AAPAVPRYVE  1080
EPDDVDPREL TRVSLKAMNV LPHELPNNLR ANLRRWLKEA RAEALQATLR PGCLQLVVDV  1140
LRQPSPSQEL SSALIPANDA DQAAADVFRV LGQRLRDTYV QVDRRVLQMR VGERPVVLSW  1200
EEAAEEGGLD DSKYPELTGC NAAAVCAGSQ ATLQLTGRYL SQPRIKVFAR LRGHDLPTTL  1260
LPPEAQPATT ASGDGGGDVS SLRLIVSVPP RTVGLMAVEV GVGHLLGDWW HVLVLPHGCE  1320
GAAEEIRRLQ AATEAAVQQR EDQGRRSASA ADGAAGDAAG VDAQAACRAS RRLVRDMASV  1380
LEVFAAAAAA DASAAAVAAM TRSSSSSGGG SATPDGAGGD AAPTGANSPP SGARCPLPNC  1440
GSSHVSRSDA SLTAISAASW SSGGRTDTLM STNAGSTVGS FMTTSSASAF MPAGMAPGQV  1500
HVPGLPVAQH TARHPAAAAA AGSPAAVTAA TAAAAAAAAV LPIVLLPPPP SAVMRQALIR  1560
AARLLRYAVA RGMPYLTSLL LTAVNRLARI QPEPQPQPQL PIHQPQAQTV QVGSAAAAAP  1620
APQPTSSGPS RLEVLAAAGV DLQELLRLAV LSGSAATVDQ LTGFAARVLG SPLRLDLPQG  1680
PGGLSALHLA ALLSDGGALA CHLLATQPWA AWQWLCLGWK PQLEAASKGR DSQQPQPREG  1740
PPQGASPSLA AASVNTNGVV EAKKELVRGD EDEEASDEED GEVGWHWTPL PPRPLSLTPG  1800
QLSVMLGNHV TVRKAVSELM TTTNSGSTGV CVLRRGPAMT AALVTALEAW GRTGVTLLQT  1860
LCAQLAQQKL E*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DJE7	1e-128	A0A2K3DJE7_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-17	SBP family protein

Link Out ? help Back to Top
Phytozome	Vocar.0003s0172.1.p