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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0003s0172.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | SBP | ||||||||
Protein Properties | Length: 1872aa MW: 191774 Da PI: 6.5807 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 78.2 | 1.3e-24 | 153 | 228 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +C+v gC a l+ +k+y+ r +vCe h +a++++v+g+ rfCqqC++f + ef +k+sC L++hn+r r k Vocar.0003s0172.1.p 153 VCEVVGCGASLEGLKRYYVRMRVCERHLHAQAIVVNGVVSRFCQQCAKFQFVGEFAGNKKSCIATLERHNARHRAK 228 6***********************************************************************9965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-22 | 149 | 214 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 21.674 | 151 | 228 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.75E-23 | 153 | 229 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.8E-25 | 154 | 227 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1872 aa Download sequence Send to blast |
MAVSCRRDDA DVASLTKARS FPHCIDLPQL QQLACVLGFV PASAEAVDEL RIWTWTFRDA 60 CLLTRRVEEE ARAEEAWALQ DYEWDPIACV AHKKRILASG EAADVAPSPL AHSFPDGALS 120 GHFFQPTPAE NPKLSSLPVL ESVDRNDAEH ATVCEVVGCG ASLEGLKRYY VRMRVCERHL 180 HAQAIVVNGV VSRFCQQCAK FQFVGEFAGN KKSCIATLER HNARHRAKVL ARMQELNDGE 240 SDSAQTGGRS SRAKAKTNSR RKGCKAAAAA VAAAASASTS VRAGSASASA DRTERANSGT 300 SGAATMDGFW MTSAVAATQA AGHGRGSAAN LVDQRAQRSL SPGVPVLPSE VATPSKPASP 360 HPPKGVWDGA SGALEELLLR PLVTTGGSGV VSTSERIALP PPLVCGGGGP FITPQQQQLL 420 LSLPKGAGVP SSWSQQQYDV QVALAAVQNQ VIMEGVSLGV HTPAMTQAGH CMEVAPSGMY 480 GTGYRANGAV PGAWNHPPCA VTARTDIHAP SGQPSFAAAA ATAPAPGPAA AAAAAASGGS 540 APSPSSAPYT SGSDVSAGGK ASQGTARQAL HAVGGGGASS AGNGSHGFPA ETTKSRGSRQ 600 SEAEPCGSTG RIAMNAASPA YSANEGVSAT RVSASGDAFG TAAGSGGAGD VIAPPQPGDV 660 AARISSIMQE LCPLIEQFKQ EVAHGPMNPH DNVLTAAAPS SGTGAGVAVA QGMGAAPVAG 720 SYTPGPSESL APVMDTVMAV MQQASQLAAS LKPPSTVAKL PWTVTSGGPD TQRQLAASGS 780 MVPEPPVLGG LQGFDQSQAH ASSLAAPLPQ LSQPPPQQQQ RPHPPLMPMP QLLQPGWRPL 840 ASHPGVVVNE AAVQQAACNV PTASSGPLSA TVSFPAPPAP GPGALWTAAP APATSLASSS 900 AATSQPPAGH IIFSNYAGAA AAADTAIERS AMGGASQLLQ QPHLPLTGAG FGNDPVPQGA 960 KDDDSSEDDE MFQQLLTLLQ DEAGDACTMQ QQQQEEQRGI ASTVHQAVMA HQQTVQAMPY 1020 GHAPMSPFYW PSVAAAAPPH PQAPSHPYPP PPLPPQLEPH PPMPSAPSWL AAPAVPRYVE 1080 EPDDVDPREL TRVSLKAMNV LPHELPNNLR ANLRRWLKEA RAEALQATLR PGCLQLVVDV 1140 LRQPSPSQEL SSALIPANDA DQAAADVFRV LGQRLRDTYV QVDRRVLQMR VGERPVVLSW 1200 EEAAEEGGLD DSKYPELTGC NAAAVCAGSQ ATLQLTGRYL SQPRIKVFAR LRGHDLPTTL 1260 LPPEAQPATT ASGDGGGDVS SLRLIVSVPP RTVGLMAVEV GVGHLLGDWW HVLVLPHGCE 1320 GAAEEIRRLQ AATEAAVQQR EDQGRRSASA ADGAAGDAAG VDAQAACRAS RRLVRDMASV 1380 LEVFAAAAAA DASAAAVAAM TRSSSSSGGG SATPDGAGGD AAPTGANSPP SGARCPLPNC 1440 GSSHVSRSDA SLTAISAASW SSGGRTDTLM STNAGSTVGS FMTTSSASAF MPAGMAPGQV 1500 HVPGLPVAQH TARHPAAAAA AGSPAAVTAA TAAAAAAAAV LPIVLLPPPP SAVMRQALIR 1560 AARLLRYAVA RGMPYLTSLL LTAVNRLARI QPEPQPQPQL PIHQPQAQTV QVGSAAAAAP 1620 APQPTSSGPS RLEVLAAAGV DLQELLRLAV LSGSAATVDQ LTGFAARVLG SPLRLDLPQG 1680 PGGLSALHLA ALLSDGGALA CHLLATQPWA AWQWLCLGWK PQLEAASKGR DSQQPQPREG 1740 PPQGASPSLA AASVNTNGVV EAKKELVRGD EDEEASDEED GEVGWHWTPL PPRPLSLTPG 1800 QLSVMLGNHV TVRKAVSELM TTTNSGSTGV CVLRRGPAMT AALVTALEAW GRTGVTLLQT 1860 LCAQLAQQKL E* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3DJE7 | 1e-128 | A0A2K3DJE7_CHLRE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 2e-17 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0003s0172.1.p |