PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0002s0599.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | C3H | ||||||||
Protein Properties | Length: 588aa MW: 63047.3 Da PI: 5.2624 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.3 | 2.6e-08 | 7 | 28 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC+ ++ +G C++G+ C F+H+ Vocar.0002s0599.1.p 7 VLCK-YHMSGVCRFGADCAFSHD 28 79**.7777*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 4.58E-6 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.69 | 3 | 30 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.3E-6 | 4 | 29 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-6 | 6 | 28 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-5 | 8 | 32 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.048 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 34 | 56 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-4 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.019 | 36 | 58 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.221 | 357 | 385 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.55E-5 | 358 | 383 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.69 | 358 | 384 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 6.9E-11 | 424 | 494 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 5.74E-11 | 426 | 492 | No hit | No description |
Pfam | PF14634 | 7.4E-8 | 426 | 486 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 1.80E-5 | 426 | 487 | No hit | No description |
SMART | SM00184 | 4.0E-7 | 427 | 484 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 12.445 | 427 | 485 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 451 | 460 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 11.375 | 514 | 543 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2 | 514 | 542 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 588 aa Download sequence Send to blast |
MSDKTKVLCK YHMSGVCRFG ADCAFSHDLT DLPNLVCKYY LAGCCAYGNR CRYDHKRPEY 60 SWKSSSRSGQ AASAQLPGAP STSQPPLQPQ QRHQEGQQQQ QQQQQQQQDT TGQLRVGSHA 120 DGQHQQHLQQ HMARLPRSLL DTNAVGTDGE GGGAGASGGT SSRRSGIGVT VHDSWEDAAA 180 ALAEEAPPGE ACTASGGAQN DEMEQGYEEY GEYGEMEGGY DEENGLDYEH GEGGYYDGYG 240 QQYGYGYCGE RKYDDVCGGI HGYDDGGDGD GEEAGGGGGG GLTMVDDDVG LLQEQELAAA 300 AATGTRPPVL QGGSSGGGGG GHSRWAAAQH PWELAATPGG GGISGRGTAA AVDPVDPADV 360 DLCPGFSLHG RCAQGEDCEL IHGLQCEICH KFRINPYNPE AAEEHRSTCR LRHERLEARL 420 RSASVECGIC LELVLSKPSV SERRFGLLTS CDHAFCLACI RSWRGRTDDA TLATDTAVRT 480 CPICRTPSHF VTPSLVWPAS SEEKAGIVSA YKDRLASIDC KHFNFGEGSC PFSTSCFYRH 540 MYKDGRLEEP VLRRAGNADG DIRVVMPLRL SAFLDTPQAL RLLSRRR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC156448 | 0.0 | AC156448.2 Volvox carteri clone JGIAOBO-33O24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002945758.1 | 0.0 | hypothetical protein VOLCADRAFT_102729 | ||||
TrEMBL | D8THQ1 | 0.0 | D8THQ1_VOLCA; Uncharacterized protein | ||||
STRING | XP_002945758.1 | 0.0 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1918 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 4e-61 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0002s0599.1.p |