PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0002s0599.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C3H
Protein Properties Length: 588aa    MW: 63047.3 Da    PI: 5.2624
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0002s0599.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.6e-08728426
                         ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                         +lC+ ++ +G C++G+ C F+H+
  Vocar.0002s0599.1.p  7 VLCK-YHMSGVCRFGADCAFSHD 28
                         79**.7777*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.58E-6328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69330IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-6429IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-6628IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5832IPR000571Zinc finger, CCCH-type
SMARTSM003560.0483257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-53456IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-43660IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0193658IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.221357385IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-5358383IPR000571Zinc finger, CCCH-type
SMARTSM003560.69358384IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.106.9E-11424494IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.74E-11426492No hitNo description
PfamPF146347.4E-8426486IPR001841Zinc finger, RING-type
CDDcd001621.80E-5426487No hitNo description
SMARTSM001844.0E-7427484IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.445427485IPR001841Zinc finger, RING-type
PROSITE patternPS005180451460IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010311.375514543IPR000571Zinc finger, CCCH-type
SMARTSM003562.2514542IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MSDKTKVLCK YHMSGVCRFG ADCAFSHDLT DLPNLVCKYY LAGCCAYGNR CRYDHKRPEY  60
SWKSSSRSGQ AASAQLPGAP STSQPPLQPQ QRHQEGQQQQ QQQQQQQQDT TGQLRVGSHA  120
DGQHQQHLQQ HMARLPRSLL DTNAVGTDGE GGGAGASGGT SSRRSGIGVT VHDSWEDAAA  180
ALAEEAPPGE ACTASGGAQN DEMEQGYEEY GEYGEMEGGY DEENGLDYEH GEGGYYDGYG  240
QQYGYGYCGE RKYDDVCGGI HGYDDGGDGD GEEAGGGGGG GLTMVDDDVG LLQEQELAAA  300
AATGTRPPVL QGGSSGGGGG GHSRWAAAQH PWELAATPGG GGISGRGTAA AVDPVDPADV  360
DLCPGFSLHG RCAQGEDCEL IHGLQCEICH KFRINPYNPE AAEEHRSTCR LRHERLEARL  420
RSASVECGIC LELVLSKPSV SERRFGLLTS CDHAFCLACI RSWRGRTDDA TLATDTAVRT  480
CPICRTPSHF VTPSLVWPAS SEEKAGIVSA YKDRLASIDC KHFNFGEGSC PFSTSCFYRH  540
MYKDGRLEEP VLRRAGNADG DIRVVMPLRL SAFLDTPQAL RLLSRRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1564480.0AC156448.2 Volvox carteri clone JGIAOBO-33O24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002945758.10.0hypothetical protein VOLCADRAFT_102729
TrEMBLD8THQ10.0D8THQ1_VOLCA; Uncharacterized protein
STRINGXP_002945758.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP19181212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.24e-61C3H family protein