PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0002s0575.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB_related
Protein Properties Length: 338aa    MW: 36477.8 Da    PI: 9.4929
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0002s0575.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.8e-10258302246
                          SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46 
                          g WT+eE+el+v+  k++G g  W + a++++ +R ++qc  ++ +
  Vocar.0002s0575.1.p 258 GEWTQEEHELFVQTAKKHGVGdKWGLFASYIP-NRVGYQCSAYYTQ 302
                          78******************************.*******999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.467252304IPR017877Myb-like domain
SuperFamilySSF466892.02E-9255303IPR009057Homeodomain-like
SMARTSM007173.2E-5256306IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-8257303IPR009057Homeodomain-like
PfamPF002494.2E-8258302IPR001005SANT/Myb domain
CDDcd001677.81E-7259304No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEATAVIDSQ LDAASTGIKE GQQRRGKGKA RCLVNKHQQD EAPQSAEMTD LERERAELIK  60
RNQMMLSQIG VTAAVEKLRQ HNLQPAAPRP QSVSEGVQAG SRPAAQGKRA RGEIEPMRRS  120
GRLAGAAAAA AIADVVESEA ADQAGATGRG VGIMTQEQYL KFKGQSLPEG WFRSDGRFRG  180
WVKAEVAEHL GLASSAAEAW EAGGGGKFQR KISKSDVPAH LKSKGWSDAR AFAASQLQKN  240
PNAYFYRHTA PGELQAQGEW TQEEHELFVQ TAKKHGVGDK WGLFASYIPN RVGYQCSAYY  300
TQVIIPSGLI LDDRFRMDAW GDAVFVGARG GRGGGDD*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002945768.10.0hypothetical protein VOLCADRAFT_115695, partial
TrEMBLD8THS00.0D8THS0_VOLCA; Uncharacterized protein (Fragment)
STRINGXP_002945768.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP463677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.24e-06myb domain protein 3r-5