PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0002s0311.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

SBP

Protein Properties

Length: 1889aa MW: 195623 Da PI: 5.411

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0002s0311.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	73.1	4.9e-23	5	65	15	75
-HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 15 keyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 +y+rr+ vC+ h +a + +v+g+ qrfCqqC++f +l +fD+ krsCr++La+h rrr Vocar.0002s0311.1.p 5 DTYYRRYSVCKDHLRALQLMVDGRIQRFCQQCGKFQDLADFDDVKRSCRTQLARHSLRRRL 65 68*********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	20.529	1	66	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.3E-23	4	64	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-19	5	66	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.0E-18	5	53	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1889 aa Download sequence Send to blast
MSLEDTYYRR YSVCKDHLRA LQLMVDGRIQ RFCQQCGKFQ DLADFDDVKR SCRTQLARHS 60 LRRRLRLNER RLQREQLQRL QEQQQQQRQQ PLHQRHQPPQ DNPYENDDDY DDDDYGSLTV 120 AGVGRPEPRN SSRSAPRPRG GAGAGASASG PFQLPGAEDT AVDFGSRGVL AAGMPSGHWT 180 RRDHFADGHH QNFARAAASD GARGSASGSG GLFCLDLEHP RSQSLKLAFC APLGGDGGGA 240 NPRLGGSEDL DGLGGNSLVS ITHKPPGRCL AAVEVEAAPA AMLVDRSASA GGGGCGSGGT 300 GSGGGDVSIR RQWLLGLRAQ QQHLEGEDER SGAATRPSSQ QQLQQNPQQQ QQKQEQEQGL 360 RDQGKLDAAA PLAATQISLP ETALRLHLNA MPALPLQRQQ RPERHQSQPQ QLLCGLLQGG 420 DVRREPSASV DAMSMPPTQS GQKLMLGNKQ QQQQLQQQQD PRQVRDPFAV WNVEQQEQPL 480 QPLQQQQEEL LQPPMLMSGA GGVERPHLTA ADAFPRDPQL LTARSIVQDV RLERELVSLL 540 GNLAAEQEKL DDMYSKGTSR IAQIAGASGS GAWTTGSGGS DRVGLGSSSG SLVGPSSGSD 600 LQSGPLVQSG PSPAGWATSG ALRLQLQQPL PPLQLQQQQQ QQQQQQQQQQ QSLMRSPLPL 660 GLTSPADGNG NGGCRLEDGG GGARRFGHDS DADPGPPTPL FGDDLHMVSH TAGERESAHP 720 DGDGDRLRTG RVRSGEVSAP GPASLPYLAA GGSDAAIASA RATGMDWVPT VGGGGGVESE 780 YVNADGVLKE AARPGTSFWP TSAPIPSPFV QPGSSRGVFY GGGSGGGSGG HRRSEQGIVG 840 DVASPLGGPD SVVARQLEHP AQGNLSYNPL TATVCDTAKA SLPLPYPPGT GQQQQQQQPS 900 QQYLVADGNG GVPRLLRPPT GPQLLQGSAE EASGAPFPSP YRPEGGASSG EEPAGVGAWP 960 AVASLQRGFP TTSYPPQPQP QPQPQPQPQP SSLLHHPLGM EQQYSQQQHH YPPPPPQQQQ 1020 QQPPHAAALD HPTPAVMLPG LTPGRQLQPL QPLLSQQPPL PPSTTRLDEQ LQHNQYNHLN 1080 QSQHKAQPAA TLPGHVQQSA SSLLGVGPHF QDNQQSHQHQ QTHNPYHNLP SSHSLPPVET 1140 APNGPPPYGV VHSLSLPALY NPGRLLQRLS LKLHGCSPGD LMPDSRATLQ SWLTSMDLQM 1200 LQYTTRSGCI LLIADVLVPV SCGAAAAPAT NIAWSLLTRM VSDGPAAGGP GSPCGGLAAA 1260 TLQSPPPAEG MAGAVLSPNR SELPPSASVE SSTSSSAALS YHEGTGARPG SSKSSSGDGA 1320 DADTDIGCGG HADSGDGSFS EAPTSKAASP TRCAIEHSPS GPDSRTVSNS GSSGSREGER 1380 AATGGCGNGA GSPAASLSDE GLTGGEAVTG VATACGDGSG TAIGHPQDHY GPPDTLPAAA 1440 AAAAAVPAAV PAFVRGAVDE PLASNAQGHM GPVSGSLCNL LRQLLGPLMA GPGAAAEGAA 1500 ATATAATNQR LVIQLDDQVL SLTWPPHLVD GRQAATSSGS DSGDVAGAGS DTAISSAKSC 1560 PHVPRGGVAP PPPTLLGLRP AAVVAGRASS LRLTLRLSPL SRLARQEANR TAISADNYVA 1620 EETEAGRDWE QPAELHLRYG GDCLVSCELC PSAFLTSPDT LVALGGPAGT MGAPEQAPAA 1680 AATALATAAT ATVAAEPPPA AIPTDPAAAV SLGKTGPGGT SAAAVASLAA AVASFGGDGH 1740 AFGAFAAEVG LIADMGLDAP CLATPGLAFV ESSCGDRLGP WLPLLVVPSE GVAEEINTLA 1800 ELYDRWQLQP FLCDLGRLLM LSSAGSCLEE AGYTEDWLAY EAFSELRESM PDAAVAAGRL 1860 LQKCIEWRLP ECTALVTSVF LGLMDGPI*

Sequence ? help Back to Top

Protein Sequence Length: 1889 aa Download sequence Send to blast

MSLEDTYYRR YSVCKDHLRA LQLMVDGRIQ RFCQQCGKFQ DLADFDDVKR SCRTQLARHS  60
LRRRLRLNER RLQREQLQRL QEQQQQQRQQ PLHQRHQPPQ DNPYENDDDY DDDDYGSLTV  120
AGVGRPEPRN SSRSAPRPRG GAGAGASASG PFQLPGAEDT AVDFGSRGVL AAGMPSGHWT  180
RRDHFADGHH QNFARAAASD GARGSASGSG GLFCLDLEHP RSQSLKLAFC APLGGDGGGA  240
NPRLGGSEDL DGLGGNSLVS ITHKPPGRCL AAVEVEAAPA AMLVDRSASA GGGGCGSGGT  300
GSGGGDVSIR RQWLLGLRAQ QQHLEGEDER SGAATRPSSQ QQLQQNPQQQ QQKQEQEQGL  360
RDQGKLDAAA PLAATQISLP ETALRLHLNA MPALPLQRQQ RPERHQSQPQ QLLCGLLQGG  420
DVRREPSASV DAMSMPPTQS GQKLMLGNKQ QQQQLQQQQD PRQVRDPFAV WNVEQQEQPL  480
QPLQQQQEEL LQPPMLMSGA GGVERPHLTA ADAFPRDPQL LTARSIVQDV RLERELVSLL  540
GNLAAEQEKL DDMYSKGTSR IAQIAGASGS GAWTTGSGGS DRVGLGSSSG SLVGPSSGSD  600
LQSGPLVQSG PSPAGWATSG ALRLQLQQPL PPLQLQQQQQ QQQQQQQQQQ QSLMRSPLPL  660
GLTSPADGNG NGGCRLEDGG GGARRFGHDS DADPGPPTPL FGDDLHMVSH TAGERESAHP  720
DGDGDRLRTG RVRSGEVSAP GPASLPYLAA GGSDAAIASA RATGMDWVPT VGGGGGVESE  780
YVNADGVLKE AARPGTSFWP TSAPIPSPFV QPGSSRGVFY GGGSGGGSGG HRRSEQGIVG  840
DVASPLGGPD SVVARQLEHP AQGNLSYNPL TATVCDTAKA SLPLPYPPGT GQQQQQQQPS  900
QQYLVADGNG GVPRLLRPPT GPQLLQGSAE EASGAPFPSP YRPEGGASSG EEPAGVGAWP  960
AVASLQRGFP TTSYPPQPQP QPQPQPQPQP SSLLHHPLGM EQQYSQQQHH YPPPPPQQQQ  1020
QQPPHAAALD HPTPAVMLPG LTPGRQLQPL QPLLSQQPPL PPSTTRLDEQ LQHNQYNHLN  1080
QSQHKAQPAA TLPGHVQQSA SSLLGVGPHF QDNQQSHQHQ QTHNPYHNLP SSHSLPPVET  1140
APNGPPPYGV VHSLSLPALY NPGRLLQRLS LKLHGCSPGD LMPDSRATLQ SWLTSMDLQM  1200
LQYTTRSGCI LLIADVLVPV SCGAAAAPAT NIAWSLLTRM VSDGPAAGGP GSPCGGLAAA  1260
TLQSPPPAEG MAGAVLSPNR SELPPSASVE SSTSSSAALS YHEGTGARPG SSKSSSGDGA  1320
DADTDIGCGG HADSGDGSFS EAPTSKAASP TRCAIEHSPS GPDSRTVSNS GSSGSREGER  1380
AATGGCGNGA GSPAASLSDE GLTGGEAVTG VATACGDGSG TAIGHPQDHY GPPDTLPAAA  1440
AAAAAVPAAV PAFVRGAVDE PLASNAQGHM GPVSGSLCNL LRQLLGPLMA GPGAAAEGAA  1500
ATATAATNQR LVIQLDDQVL SLTWPPHLVD GRQAATSSGS DSGDVAGAGS DTAISSAKSC  1560
PHVPRGGVAP PPPTLLGLRP AAVVAGRASS LRLTLRLSPL SRLARQEANR TAISADNYVA  1620
EETEAGRDWE QPAELHLRYG GDCLVSCELC PSAFLTSPDT LVALGGPAGT MGAPEQAPAA  1680
AATALATAAT ATVAAEPPPA AIPTDPAAAV SLGKTGPGGT SAAAVASLAA AVASFGGDGH  1740
AFGAFAAEVG LIADMGLDAP CLATPGLAFV ESSCGDRLGP WLPLLVVPSE GVAEEINTLA  1800
ELYDRWQLQP FLCDLGRLLM LSSAGSCLEE AGYTEDWLAY EAFSELRESM PDAAVAAGRL  1860
LQKCIEWRLP ECTALVTSVF LGLMDGPI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-15	7	64	26	83	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002946234.1	0.0	hypothetical protein VOLCADRAFT_86305
TrEMBL	D8TIF1	0.0	D8TIF1_VOLCA; Uncharacterized protein
STRING	XP_002946234.1	0.0	(Volvox carteri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	5e-13	squamosa promoter binding protein-like 3

Link Out ? help Back to Top
Phytozome	Vocar.0002s0311.1.p