![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vocar.0002s0236.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 2230aa MW: 219890 Da PI: 7.831 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 26.3 | 1.9e-08 | 1785 | 1833 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++ + grW+A+ ++ +g + ++lg ++t+ eAa+a ++a ++g Vocar.0002s0236.1.p 1785 SRYTGVYRTP-GGRWRAQ---FCYRG--AVHQLGMYDTEREAAAAWDQAVVTFRG 1833 78*****999.9******...97765..**********99*****9999877665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.1E-5 | 1785 | 1827 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-9 | 1785 | 1835 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-7 | 1786 | 1843 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-4 | 1786 | 1849 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.892 | 1786 | 1843 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 2230 aa Download sequence Send to blast |
PCTGLLHYVH AFLLAACKLG AAQDRGSPYD SPREEVNNCN NKPSTAKKFR NASPQRAHLV 60 GANSFGIYTK GIGPTETARE PKDRSKARRS ELNRAGVDQC PCKRATSKTS LRTPSDGRTV 120 THASGQRHEG TVTSAIASLP TRDHASMLQQ LATQMQSQQH LLGNASPYVW EQQPRPAELG 180 GSLAVVSSSV SQRPFSVFPV EPSIDRNAPY FSQGSGSTTL QSGWADSRVL PHPFASSNSS 240 SLQVSLELPP GQFTSPGTLP LHSPATSAPM TATSAVPQPQ PQPETLAAVP GVRGVSCVIV 300 DGQPSLGLSP PAAGGGRGAS ASGAALPLLP QPPLGSGGVL QLAAPAAGAA AATGPTAAAT 360 ATVQGSSAPA ELTAPTCASL PALCLPAVAS DVCGLAPVPS GASGGGGSGG RVGIDSHHAT 420 GQPAAAGGGA AVVAAGVAMP PQQQHPNPAP PQHSGGLSLR RIKPVAAAID LHCALAARKE 480 QHPVPPPPPH PQPQQQPLLQ SPSSAICDAS TSGRPGPYVP QCGLAGGSSV LPIAPAVEGV 540 PSAAAAGPAH SGSADGAPAA SARAAVAVGL SAGVDGMKGM NAAHSTMQQL PPQQADGGSN 600 ETAGEGQVLW APTAAVNTTA DTAPWAGVVS SGHMGPYPGG RADAVGASGS GGGGTATTFT 660 IGCNLLQQGT GTTTALPCTY GSQARASGGG GGPDAGGGGG GGLVPTDCVG PPAGAPILSG 720 RASDPGVSSF PQQQQQQQVV LLPPGESASA SPAVKSSAHK AIAAIPVSLQ QQQQQQQLAG 780 GSTSGGAIAD RFLASLVLPG VGGLTPPTEP ASGGFSLPAE AAQEPPHPQL QPQHLPQPVA 840 AAAAAPQPQP LLFPPSLGIP PFSPAALQLM AFSQMGQAVA ATAEHQQHHQ ALQSDQQQQQ 900 QQQLAQLQQH HQAAAALSLM QHMWQAPFGL VMPPGMMGMG MVPGMIWPPG QMGLTPAAMP 960 TPGGPLNPAA AAAAAAAAAA QFPALFNPAM MLPALAPFAL PLQAAATAAA AQQLQQQQQQ 1020 QQQQPAATVA AVNAAISGRS TAGNAGMTAA AAAVPPALVK GSSRPTKSAV KTEAAASVRG 1080 ASATQEPAVQ KQQQPQQPGG TTSCVGPEAA VRAPPTRCLT PLVPSALPSA AAATTAAAAA 1140 AHPLVVQQVR PDFTAFAGAP AFSAAEADSR PGPPPQTEAD DGGGVLAAPA AANCRRGNTA 1200 AGAATRDGAS GDGNKDNSAV GAADADAEAE VEVAKKAPRS LPGLEVTRLQ SFASADLVVV 1260 DALQLLAASP PPSPHRERRA SGTSGASVTT AGGGGGSRRS SDGGGAAGAA AGIGPTATAD 1320 ADTTTSGRPH TVPARRMFEL PDPVPVKREP PQPQSGAAGL TSAAGQGPRA AVTSAGEVRG 1380 PAATIPASAR LPWLATSPAL PLPPRAAAAA AGTLDRQRLL HLAAVGAEKV RRRASGQGGS 1440 GASLVGLEAA ATGVADGRED EPQLALPPGA RRPKTRLARA AAAPGGAFLA VILEATEAAA 1500 AASAADAEIG GDGEEMETHA GAVATAQGLG LGHSRAPVVA GSQPLSAAAV AAIGAGRSAR 1560 RSTGSGGGGG TRKVQWATSE EAPFGSMRSA ATAGAEEDEG MVQGGEEEDV GEEDGEELEE 1620 VAAARGVRQR SRRWRHPAAA AAGSDGGGGG EGDEDDSDED YNLGREARRR ARGARRGGGG 1680 AGGATASVFA AARRAARGGG GGGSGGSAVD SDDGEGGLTS DDPAHGYTGD GDDDTATAEG 1740 AAAAAAAARR RRSGHGRPPG AGNLRKMKPR RLQSDGRLGF AMRSSRYTGV YRTPGGRWRA 1800 QFCYRGAVHQ LGMYDTEREA AAAWDQAVVT FRGSSSGVQL NLPQLLNSYD LQNVREHIHR 1860 ILDSKIATTR TKRCLNSYAR NPPGPKSPSR VVPAAVIENI TTEPGTEDGG DVQLYDGGGD 1920 AAASGHVDLS GLPAAAAAAA AGGGGGGVGE VGSSQGRVRT ATAAAGRACR RRRSPSPSGD 1980 GGPDDSGGDG ASGSTAGGCR AARKRAHHDV GGGGGGGGAV LGNSSGGLQP HTAAQDNTAG 2040 GQQLLLQAQP QRLGALPVGD AALLGLAALR RHLPLPPPPS VAAGAAADTA SLPPPPLRSH 2100 DLAGGDVTAA ATTDIAATAA AVATDAAVAA ASAAAAVDDV LPPSKRSSET TTTADAAAAA 2160 AAAAASLVQP STHEPWDVEG PAVSKVAAEA QHRSSSSGGG EGGDATGARS GRAASPKRRK 2220 SLAIRSRDY* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002946268.1 | 0.0 | hypothetical protein VOLCADRAFT_120236 | ||||
TrEMBL | D8TIL0 | 0.0 | D8TIL0_VOLCA; Uncharacterized protein | ||||
STRING | XP_002946268.1 | 0.0 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP9751 | 4 | 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Vocar.0002s0236.1.p |