PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0002s0008.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

SBP

Protein Properties

Length: 1330aa MW: 136155 Da PI: 9.9134

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0002s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	99.5	2.8e-31	1029	1102	2	75
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 C+v++C++dls++keyh+r+++C+ h ka+ v+ +g+ qrfCqqC+rfh+lsefD +krsCr r + n+r + Vocar.0002s0008.1.p 1029 CHVDDCNVDLSSLKEYHQRFRICDYHLKAEIVMREGIPQRFCQQCGRFHTLSEFDGTKRSCRARGVHGNRRPVR 1102 ****************************************************************9888877555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.0E-30	1024	1090	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	24.94	1026	1103	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.44E-28	1027	1104	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.1E-27	1029	1099	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1330 aa Download sequence Send to blast
MVDSHIEIFA EAPLRADGLR YHRNQASPRN STQDIGVIAT QSFSGKELSG SCVLQRRSGV 60 PDSVAQSVEA QPRALPLEVV LRNGRMIYEI PWPSCIAFRF DDVVATSSFQ ALSSEALRLL 120 LTYCRASAGE MGLARALARW ALRRPEHLAE CEVMFKELNI TTTVLLQLLQ SPGFVAGLQE 180 GIPAAAPAPA VAKAEPADRE ATAGEAAAAV LPGSAGMVTG GGDGSSRANP GRSAGSSGAA 240 AGLGSMGSLI TVGLPQPHRD AGQSGRLGTA EGPRRHQQLR VGNQQQQQQL LRSGSGPAAG 300 AGQRSPGSSS AGGGARTEGP SGDGGCGGFA NTAERDRDSS GGGAPPQSSP GKGERWVLGL 360 VERGGAGGAR QSGPGSSPSG AGVASGGGDI SRAALQQLQQ QQGPTARPVA PRVFSLDGGV 420 AAAAAHLDTE TRFRSPLLQE FSRAVGTAAA GVGTSPRYDA DTPGIRRLAA LSPMATVPMS 480 AAAVTGRPSM RPVVTLDAPA EPSRAPAPLL SAHLPLFPVL GTDDADTASP RSEDSAGSAG 540 GETLLAVPLS ALEQAGLTLH LLPSGALAAS GDLLGTWPLP LQVVSAGSGP HAPLVALLPT 600 SLVRKLQQQG PSRAAAAASA GVPPAQRGRP ELAHQQSDHL AQLAAIAVPS PVQQQQQRPP 660 ASQPRGGGGP RLPLPWEATA DDSSASGGGV GLEEPALQME MDAEALDMQR LGQSGQGKGA 720 GASVSGMLPT SRFTSSSRGG TGPAGLLGPD SLGNAASLMN TIEAAAAVAA AAAHQQQQQQ 780 QHEGGGLALS SAGAPARSGR GPVVSVLGGG SDGRGGLVTG NDVKALSSPA ARYGAVGLGS 840 MTALLAAPPP RWSSAPAAAG GPGGMAAAVA MATAAAAQLA AVRSGGKQQP SSSMALPPSE 900 DPAAVAPAAA SIPFGSGGGR RRRATPEEYP DLGEEGSGGS RAAGGGSGAG GQRSATRSSL 960 GGRTGGDVNP AAQPSNKLGE LHMHPNPPRL QLDVGCWQML LLRLLLLLYR RLFACPMSYT 1020 RTAQVPLLCH VDDCNVDLSS LKEYHQRFRI CDYHLKAEIV MREGIPQRFC QQCGRFHTLS 1080 EFDGTKRSCR ARGVHGNRRP VRTSSNSSSS STSNSSGSST SSSRENGICH PPCTAPHRKT 1140 GNISAIIYSR RNRGDIPADS TPDLALTQFI LDVMAGQRHR RICSLRVFSA WEAMCGSGDE 1200 LSFLGPSAIA GRCKPGRTPR KLHGVLTFVV TASLNGPLLQ GVFRLGGKLQ RHNARRRKRP 1260 DQRGSGGDGG SDEPRKSRHP APLPSTSQQE PELGLALHRT ERPLACHPPP TDPLLLCFRV 1320 VLSPHHFPK*

Sequence ? help Back to Top

Protein Sequence Length: 1330 aa Download sequence Send to blast

MVDSHIEIFA EAPLRADGLR YHRNQASPRN STQDIGVIAT QSFSGKELSG SCVLQRRSGV  60
PDSVAQSVEA QPRALPLEVV LRNGRMIYEI PWPSCIAFRF DDVVATSSFQ ALSSEALRLL  120
LTYCRASAGE MGLARALARW ALRRPEHLAE CEVMFKELNI TTTVLLQLLQ SPGFVAGLQE  180
GIPAAAPAPA VAKAEPADRE ATAGEAAAAV LPGSAGMVTG GGDGSSRANP GRSAGSSGAA  240
AGLGSMGSLI TVGLPQPHRD AGQSGRLGTA EGPRRHQQLR VGNQQQQQQL LRSGSGPAAG  300
AGQRSPGSSS AGGGARTEGP SGDGGCGGFA NTAERDRDSS GGGAPPQSSP GKGERWVLGL  360
VERGGAGGAR QSGPGSSPSG AGVASGGGDI SRAALQQLQQ QQGPTARPVA PRVFSLDGGV  420
AAAAAHLDTE TRFRSPLLQE FSRAVGTAAA GVGTSPRYDA DTPGIRRLAA LSPMATVPMS  480
AAAVTGRPSM RPVVTLDAPA EPSRAPAPLL SAHLPLFPVL GTDDADTASP RSEDSAGSAG  540
GETLLAVPLS ALEQAGLTLH LLPSGALAAS GDLLGTWPLP LQVVSAGSGP HAPLVALLPT  600
SLVRKLQQQG PSRAAAAASA GVPPAQRGRP ELAHQQSDHL AQLAAIAVPS PVQQQQQRPP  660
ASQPRGGGGP RLPLPWEATA DDSSASGGGV GLEEPALQME MDAEALDMQR LGQSGQGKGA  720
GASVSGMLPT SRFTSSSRGG TGPAGLLGPD SLGNAASLMN TIEAAAAVAA AAAHQQQQQQ  780
QHEGGGLALS SAGAPARSGR GPVVSVLGGG SDGRGGLVTG NDVKALSSPA ARYGAVGLGS  840
MTALLAAPPP RWSSAPAAAG GPGGMAAAVA MATAAAAQLA AVRSGGKQQP SSSMALPPSE  900
DPAAVAPAAA SIPFGSGGGR RRRATPEEYP DLGEEGSGGS RAAGGGSGAG GQRSATRSSL  960
GGRTGGDVNP AAQPSNKLGE LHMHPNPPRL QLDVGCWQML LLRLLLLLYR RLFACPMSYT  1020
RTAQVPLLCH VDDCNVDLSS LKEYHQRFRI CDYHLKAEIV MREGIPQRFC QQCGRFHTLS  1080
EFDGTKRSCR ARGVHGNRRP VRTSSNSSSS STSNSSGSST SSSRENGICH PPCTAPHRKT  1140
GNISAIIYSR RNRGDIPADS TPDLALTQFI LDVMAGQRHR RICSLRVFSA WEAMCGSGDE  1200
LSFLGPSAIA GRCKPGRTPR KLHGVLTFVV TASLNGPLLQ GVFRLGGKLQ RHNARRRKRP  1260
DQRGSGGDGG SDEPRKSRHP APLPSTSQQE PELGLALHRT ERPLACHPPP TDPLLLCFRV  1320
VLSPHHFPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-19	1028	1099	10	82	squamosa promoter binding protein-like 4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	1e-21	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	Vocar.0002s0008.1.p