PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0001s1791.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family WRKY
Protein Properties Length: 637aa    MW: 67619.2 Da    PI: 7.0585
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0001s1791.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12e-29121178259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYG K vkgs++prsYY+C+++gC +kk vers+ d++v+ + Y+g+H h+
  Vocar.0001s1791.1.p 121 SDGWQWRKYGEKLVKGSPNPRSYYKCSHPGCLAKKIVERSEADGNVLSTEYKGDHCHP 178
                          7*******************************************************97 PP
2WRKY1053.9e-33356414159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +dDg++WrKYGqK+vkgs+fpr+YY+Ct+agC+v+k+versaed++ +++tYeg+Hnh+
  Vocar.0001s1791.1.p 356 MDDGFRWRKYGQKQVKGSPFPRAYYKCTHAGCTVRKHVERSAEDETRFVVTYEGTHNHR 414
                          59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-27114180IPR003657WRKY domain
PROSITE profilePS5081128.116115180IPR003657WRKY domain
SuperFamilySSF1182901.15E-24119180IPR003657WRKY domain
SMARTSM007741.0E-33120179IPR003657WRKY domain
PfamPF031068.6E-23122178IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-31352416IPR003657WRKY domain
SuperFamilySSF1182908.76E-28353416IPR003657WRKY domain
SMARTSM007741.3E-37356415IPR003657WRKY domain
PROSITE profilePS5081131.548356416IPR003657WRKY domain
PfamPF031063.8E-26357414IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MDSSLPVPRP SSTRGGAGGA PGASPCHLNP LQALAHHLVN PRGATHDSPV LLPLLQQVEA  60
SPTTGIHQLC PPLFQSQSQP ARLPLPIPAR MEAASGAEVS RVIKREYEPR VGNGKQSVAN  120
SDGWQWRKYG EKLVKGSPNP RSYYKCSHPG CLAKKIVERS EADGNVLSTE YKGDHCHPAP  180
LTSKASRFRP KPKAEQPAMG TSSLPSVGML PMSGGGMLPI PDALKSDFPV SNQGPGSLAV  240
EHEDDTETSE AEPAPVLRSA PQDVRPAHAA ANIIRRLRES QDSPSKRLDL LAAYAEEAER  300
QLHSNSNSPE AGPCNKRQRT DGAATRARAH CDEDDEGAAA PSGSGTQRVV DMVVNMDDGF  360
RWRKYGQKQV KGSPFPRAYY KCTHAGCTVR KHVERSAEDE TRFVVTYEGT HNHRAPTGGR  420
RRSPKDVAEA EDEDFEGDEA EEDSSQPTSP NYGPHGTQPS QAQHPAASRG RQAAAQQQQQ  480
QQPGSAELGQ QLQLQSSLLA SSVLQQAALT GVLPLLPYNT SLTSEVLASL GLSAEALNGM  540
ETLNALNLAS VSNLADLSHL LRQHAQIDMA LAAQAQAMDA ASAGWDPLAC LITPRPNVSP  600
AGAQSGQAQA VPSAGTSKQG KPTVAQTRQQ VATTEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25122416177Probable WRKY transcription factor 4
2lex_A1e-25122416177Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001692342.10.0WRKY family transcription factor
TrEMBLA0A2K3DUS10.0A0A2K3DUS1_CHLRE; Uncharacterized protein
STRINGEDP042920.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4691626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30250.14e-24WRKY DNA-binding protein 25