PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0001s1684.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | C3H | ||||||||
Protein Properties | Length: 442aa MW: 46124.3 Da PI: 8.5868 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.9 | 5.4e-06 | 156 | 176 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + C ffar G+C +G+ C++ H Vocar.0001s1684.1.p 156 RVCTFFAR-GQCTRGAECPYRH 176 67******.**********977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16131 | 2.4E-9 | 109 | 189 | IPR032297 | Torus domain |
SMART | SM00356 | 4.1E-6 | 152 | 178 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 152 | 179 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-6 | 154 | 177 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MAARLLRDPD ADGWERSDMP IVCETCLGPN PFVRMQRIEF GGTCHISGRP YTVFRWRPGN 60 DARYKKTVIC QEVAKAKNVC QVCLLDLEYG LPVQVRDTAL GIKPDDEPQS DVGKEYKLQM 120 AVTEGSNASS FTTTRPNEML QKLQRTAPYY KRNQARVCTF FARGQCTRGA ECPYRHEMPI 180 TGELANQNMK DRYYGVNDPV ANKMLRRADE MGKLNPQEDT STTTLGGLDA SASEGDILDG 240 DLASVRKAST SGRGAAAPGP VPSHVLTAMG GAVPAAPPSG PNFFNLPGPN AASSYYPSMD 300 PQAMGSRIAS GGVPGAAAAA AGSQQQPGLP GAPGGLAKRP GQDGGGAGGG EGSDAKRPRG 360 PPPPMPPGPM PPGPGPSYGA PPPLYGAPPP LYGAPPPPGY HPGHPGMGPP PPYGVPPPGM 420 YAPPPPRPMV PAARPPPPGM Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_P | 4e-83 | 13 | 257 | 14 | 270 | Pre-mRNA-splicing factor RBM22 |
5xjc_O | 4e-83 | 13 | 257 | 14 | 270 | Pre-mRNA-splicing factor RBM22 |
5yzg_O | 4e-83 | 13 | 257 | 14 | 270 | Pre-mRNA-splicing factor RBM22 |
5z56_O | 4e-83 | 13 | 257 | 14 | 270 | Pre-mRNA-splicing factor RBM22 |
5z57_O | 4e-83 | 13 | 257 | 14 | 270 | Pre-mRNA-splicing factor RBM22 |
6ff4_P | 4e-83 | 13 | 257 | 14 | 270 | Pre-mRNA-splicing factor RBM22 |
6ff7_P | 4e-83 | 13 | 257 | 14 | 270 | Pre-mRNA-splicing factor RBM22 |
6icz_O | 4e-83 | 13 | 257 | 14 | 270 | Pre-mRNA-splicing factor RBM22 |
6id0_O | 4e-83 | 13 | 257 | 14 | 270 | Pre-mRNA-splicing factor RBM22 |
6id1_O | 4e-83 | 13 | 257 | 14 | 270 | Pre-mRNA-splicing factor RBM22 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002951849.1 | 1e-166 | hypothetical protein VOLCADRAFT_61843 | ||||
Swissprot | Q9LNV5 | 1e-110 | C3H4_ARATH; Zinc finger CCCH domain-containing protein 4 | ||||
TrEMBL | A0A150FWY4 | 0.0 | A0A150FWY4_GONPE; Uncharacterized protein | ||||
STRING | XP_002951849.1 | 1e-166 | (Volvox carteri) |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0001s1684.1.p |