PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0001s1684.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C3H
Protein Properties Length: 442aa    MW: 46124.3 Da    PI: 8.5868
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0001s1684.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.4e-06156176425
                          ---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                          + C ffar G+C +G+ C++ H
  Vocar.0001s1684.1.p 156 RVCTFFAR-GQCTRGAECPYRH 176
                          67******.**********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF161312.4E-9109189IPR032297Torus domain
SMARTSM003564.1E-6152178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356152179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6154177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MAARLLRDPD ADGWERSDMP IVCETCLGPN PFVRMQRIEF GGTCHISGRP YTVFRWRPGN  60
DARYKKTVIC QEVAKAKNVC QVCLLDLEYG LPVQVRDTAL GIKPDDEPQS DVGKEYKLQM  120
AVTEGSNASS FTTTRPNEML QKLQRTAPYY KRNQARVCTF FARGQCTRGA ECPYRHEMPI  180
TGELANQNMK DRYYGVNDPV ANKMLRRADE MGKLNPQEDT STTTLGGLDA SASEGDILDG  240
DLASVRKAST SGRGAAAPGP VPSHVLTAMG GAVPAAPPSG PNFFNLPGPN AASSYYPSMD  300
PQAMGSRIAS GGVPGAAAAA AGSQQQPGLP GAPGGLAKRP GQDGGGAGGG EGSDAKRPRG  360
PPPPMPPGPM PPGPGPSYGA PPPLYGAPPP LYGAPPPPGY HPGHPGMGPP PPYGVPPPGM  420
YAPPPPRPMV PAARPPPPGM Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_P4e-831325714270Pre-mRNA-splicing factor RBM22
5xjc_O4e-831325714270Pre-mRNA-splicing factor RBM22
5yzg_O4e-831325714270Pre-mRNA-splicing factor RBM22
5z56_O4e-831325714270Pre-mRNA-splicing factor RBM22
5z57_O4e-831325714270Pre-mRNA-splicing factor RBM22
6ff4_P4e-831325714270Pre-mRNA-splicing factor RBM22
6ff7_P4e-831325714270Pre-mRNA-splicing factor RBM22
6icz_O4e-831325714270Pre-mRNA-splicing factor RBM22
6id0_O4e-831325714270Pre-mRNA-splicing factor RBM22
6id1_O4e-831325714270Pre-mRNA-splicing factor RBM22
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002951849.11e-166hypothetical protein VOLCADRAFT_61843
SwissprotQ9LNV51e-110C3H4_ARATH; Zinc finger CCCH domain-containing protein 4
TrEMBLA0A150FWY40.0A0A150FWY4_GONPE; Uncharacterized protein
STRINGXP_002951849.11e-166(Volvox carteri)