PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0001s1183.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

bZIP

Protein Properties

Length: 1898aa MW: 193615 Da PI: 8.6247

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0001s1183.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.1	2.1e-09	1264	1310	4	50
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 e r+ +NReAA +sR+R+ +++++Le+ + +L++ +L+k le Vocar.0001s1183.1.p 1264 MTQEERMVRNREAAAKSRARRHQYQQNLEQHIRALQQHSAELRKLLE 1310 56799***********************************9998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50217	9.036	1263	1310	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.50E-13	1265	1317	No hit	No description
SuperFamily	SSF57959	1.76E-6	1266	1309	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.8E-8	1267	1309	No hit	No description
Pfam	PF07716	2.9E-5	1267	1309	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	1269	1283	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1898 aa Download sequence Send to blast
MEGTRGNSNI QNILRRGYHD EDDQRDQDAA KQMAMGYLGQ GSLLHGVLPT PPVEAPASGQ 60 PALGHDHQSL AQPLPFQQFG MPIQAQGSLP ADFGAGTTAP RSALLGHLAA ALDQRFDHRR 120 LSEADSWHAE ILRTEASYLS QRNFDMAKRE SCTDSSADVE YLLAGGLSLP AMRRTSSATT 180 SHVLAAGGLL PAPLRPGSIV ATGSGSLPPP PLSSGPATHL PSLNSGIGPA AGAHHHITQL 240 RHPAALQMPP HPGLNAPQLQ RPELPQSQQH LQQQISSHAG SVPSAQQSGV LGLREPTRSE 300 TLGSGIGTAG GSRQDRWSEE GASIGGLPRG QAGGLSMPPL RTSAAPPLGQ ERLAAGAAAA 360 AVMEATVDQS LPVRDLQPQP QHGQLFAASF GCISPAVPRG SASRHGLQEP GHGHGPAHPD 420 PRGVTAGHGV AGTEAVAAAA GGVSGRVPPV LLTTTPGPGP DRFQSPLGPG GLLSDAGGGN 480 VGCVGTVAAA SAEVDDRHIS ASAFLEFAGE AGLFTSSGGG GGGLNCGRGG GGGGDSPRSP 540 SHLSVLAAMQ LSRQQQQQQQ QQQQQQSLLL QQQQQQIRQL SRGGLSMQQT MQPGPLYGGT 600 SVPQLMRPSA AMFTAAAAAG LQEGLPRLPG AVAGAGAHGA GSGLQAPGGG GGSSGGYASP 660 PVLVAHGGGA VSDGGRSPVT ASPRHTLQQQ SPYNAHISPH LQQNSLLAQS QQQQQQQQVQ 720 QLQHHEHHHQ QQHEHQLQLA QQLRSHTDSP GRVRMLAAQQ VLRPSSPYRL DEVQQQQRSP 780 LTAPHRATSS QPPIHAQPLY QAEGHCLQQQ PQQQSPYLPQ QQPQQQQQQQ QAMTPFMLHL 840 QQQAAEQLRR RAVGSSSGAA AAVPLQSPPA HHQPPPPPPP PPPPPPQQQQ QQVSAATRLE 900 TVQLPPPPTA SAHPQPPQRR QQQSPDLEHL KTEGGDTSRL GTAGAVGGGG GRQRSPPGRA 960 ATPTPTPRHS RTLPHPHSQP PTQQQQQQQQ GQQVPAMLAD VVPDSTTPGK ADRSGVAVAA 1020 ALARASRLMK RRRASPRSVV KHAPGVSLAE PDAEAGQGPG PGPGPSSGSQ RSHQPSGGGL 1080 SRTRSAAMAS PAGSLQRRTT SLSGIGGGPV RPDISAATAN ATVTATATAN ATATTTSARL 1140 FSESEGEEVQ RRRRDGEDGE EGHEVGREVA IAAGDSDDED GSSDGADSSP DTATVAPSGG 1200 DADEAYGRVG SSRRSRTAIS GGVGAAAAAR GGPDAPDAPV AVGASADTQM IIDPITGLPR 1260 RRAMTQEERM VRNREAAAKS RARRHQYQQN LEQHIRALQQ HSAELRKLLE AHAVPLPPHL 1320 LEQQVRLGDG LPPPPPRTSP PRSRKGIGGR PRKYPLNPDG SKPSRKRRRT STGTALTTAA 1380 TPVPAARGVS AAAVETTGGA SDEDVKPRRV TAGRRTSTAA GGGNDGGSGE GGDGGGGEEG 1440 VRGAGGGNRG GRGRRGRGGG GSRARGRGII GGGGRTGRKK LQSDDVEEDD AGSGPGAAGG 1500 GEEQVRDSGE ERLEQQVVAG ASPRSAGATA AASSGGGGAG GAGGLDISRT VNKAALATEE 1560 ALTPPRPRRS TTTSAVGRLA TEAAVDAVDG DTAVVVVGQS PLRQQPFEMA PFPQYRYASQ 1620 PPVPPVAAPP PPSCVPTSPA NLRPGGEVAA DVTRLDTFGP AEADASAAAT AADPAQPPFT 1680 DPWQLPQWPP PPPPPPPLIP GPPRPSLESP AGPSARPARA PCATDPRVAA ATALLPPLQP 1740 QPPPHGESGP EALGLDDVAS GGAQPAMVLS PGGVGGGDGD GGVLGSLASP GGDIAGSSAD 1800 GGSAGPSGGD MGPFDMLGLG FGDLLGAGFL GQQRQGMVLR SDGVHGGGVV MKAKQVLCVD 1860 DDVLEVHLES LIKSAFGCFL AAQKPNCGMR LKLRPVC*

Sequence ? help Back to Top

Protein Sequence Length: 1898 aa Download sequence Send to blast

MEGTRGNSNI QNILRRGYHD EDDQRDQDAA KQMAMGYLGQ GSLLHGVLPT PPVEAPASGQ  60
PALGHDHQSL AQPLPFQQFG MPIQAQGSLP ADFGAGTTAP RSALLGHLAA ALDQRFDHRR  120
LSEADSWHAE ILRTEASYLS QRNFDMAKRE SCTDSSADVE YLLAGGLSLP AMRRTSSATT  180
SHVLAAGGLL PAPLRPGSIV ATGSGSLPPP PLSSGPATHL PSLNSGIGPA AGAHHHITQL  240
RHPAALQMPP HPGLNAPQLQ RPELPQSQQH LQQQISSHAG SVPSAQQSGV LGLREPTRSE  300
TLGSGIGTAG GSRQDRWSEE GASIGGLPRG QAGGLSMPPL RTSAAPPLGQ ERLAAGAAAA  360
AVMEATVDQS LPVRDLQPQP QHGQLFAASF GCISPAVPRG SASRHGLQEP GHGHGPAHPD  420
PRGVTAGHGV AGTEAVAAAA GGVSGRVPPV LLTTTPGPGP DRFQSPLGPG GLLSDAGGGN  480
VGCVGTVAAA SAEVDDRHIS ASAFLEFAGE AGLFTSSGGG GGGLNCGRGG GGGGDSPRSP  540
SHLSVLAAMQ LSRQQQQQQQ QQQQQQSLLL QQQQQQIRQL SRGGLSMQQT MQPGPLYGGT  600
SVPQLMRPSA AMFTAAAAAG LQEGLPRLPG AVAGAGAHGA GSGLQAPGGG GGSSGGYASP  660
PVLVAHGGGA VSDGGRSPVT ASPRHTLQQQ SPYNAHISPH LQQNSLLAQS QQQQQQQQVQ  720
QLQHHEHHHQ QQHEHQLQLA QQLRSHTDSP GRVRMLAAQQ VLRPSSPYRL DEVQQQQRSP  780
LTAPHRATSS QPPIHAQPLY QAEGHCLQQQ PQQQSPYLPQ QQPQQQQQQQ QAMTPFMLHL  840
QQQAAEQLRR RAVGSSSGAA AAVPLQSPPA HHQPPPPPPP PPPPPPQQQQ QQVSAATRLE  900
TVQLPPPPTA SAHPQPPQRR QQQSPDLEHL KTEGGDTSRL GTAGAVGGGG GRQRSPPGRA  960
ATPTPTPRHS RTLPHPHSQP PTQQQQQQQQ GQQVPAMLAD VVPDSTTPGK ADRSGVAVAA  1020
ALARASRLMK RRRASPRSVV KHAPGVSLAE PDAEAGQGPG PGPGPSSGSQ RSHQPSGGGL  1080
SRTRSAAMAS PAGSLQRRTT SLSGIGGGPV RPDISAATAN ATVTATATAN ATATTTSARL  1140
FSESEGEEVQ RRRRDGEDGE EGHEVGREVA IAAGDSDDED GSSDGADSSP DTATVAPSGG  1200
DADEAYGRVG SSRRSRTAIS GGVGAAAAAR GGPDAPDAPV AVGASADTQM IIDPITGLPR  1260
RRAMTQEERM VRNREAAAKS RARRHQYQQN LEQHIRALQQ HSAELRKLLE AHAVPLPPHL  1320
LEQQVRLGDG LPPPPPRTSP PRSRKGIGGR PRKYPLNPDG SKPSRKRRRT STGTALTTAA  1380
TPVPAARGVS AAAVETTGGA SDEDVKPRRV TAGRRTSTAA GGGNDGGSGE GGDGGGGEEG  1440
VRGAGGGNRG GRGRRGRGGG GSRARGRGII GGGGRTGRKK LQSDDVEEDD AGSGPGAAGG  1500
GEEQVRDSGE ERLEQQVVAG ASPRSAGATA AASSGGGGAG GAGGLDISRT VNKAALATEE  1560
ALTPPRPRRS TTTSAVGRLA TEAAVDAVDG DTAVVVVGQS PLRQQPFEMA PFPQYRYASQ  1620
PPVPPVAAPP PPSCVPTSPA NLRPGGEVAA DVTRLDTFGP AEADASAAAT AADPAQPPFT  1680
DPWQLPQWPP PPPPPPPLIP GPPRPSLESP AGPSARPARA PCATDPRVAA ATALLPPLQP  1740
QPPPHGESGP EALGLDDVAS GGAQPAMVLS PGGVGGGDGD GGVLGSLASP GGDIAGSSAD  1800
GGSAGPSGGD MGPFDMLGLG FGDLLGAGFL GQQRQGMVLR SDGVHGGGVV MKAKQVLCVD  1860
DDVLEVHLES LIKSAFGCFL AAQKPNCGMR LKLRPVC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1364	1368	RKRRR
2	1364	1369	RKRRRT

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP14371	2	2

Link Out ? help Back to Top
Phytozome	Vocar.0001s1183.1.p