PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vocar.0001s1183.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 1898aa MW: 193615 Da PI: 8.6247 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.1 | 2.1e-09 | 1264 | 1310 | 4 | 50 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 e r+ +NReAA +sR+R+ +++++Le+ + +L++ +L+k le Vocar.0001s1183.1.p 1264 MTQEERMVRNREAAAKSRARRHQYQQNLEQHIRALQQHSAELRKLLE 1310 56799***********************************9998665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50217 | 9.036 | 1263 | 1310 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 3.50E-13 | 1265 | 1317 | No hit | No description |
SuperFamily | SSF57959 | 1.76E-6 | 1266 | 1309 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.8E-8 | 1267 | 1309 | No hit | No description |
Pfam | PF07716 | 2.9E-5 | 1267 | 1309 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 1269 | 1283 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1898 aa Download sequence Send to blast |
MEGTRGNSNI QNILRRGYHD EDDQRDQDAA KQMAMGYLGQ GSLLHGVLPT PPVEAPASGQ 60 PALGHDHQSL AQPLPFQQFG MPIQAQGSLP ADFGAGTTAP RSALLGHLAA ALDQRFDHRR 120 LSEADSWHAE ILRTEASYLS QRNFDMAKRE SCTDSSADVE YLLAGGLSLP AMRRTSSATT 180 SHVLAAGGLL PAPLRPGSIV ATGSGSLPPP PLSSGPATHL PSLNSGIGPA AGAHHHITQL 240 RHPAALQMPP HPGLNAPQLQ RPELPQSQQH LQQQISSHAG SVPSAQQSGV LGLREPTRSE 300 TLGSGIGTAG GSRQDRWSEE GASIGGLPRG QAGGLSMPPL RTSAAPPLGQ ERLAAGAAAA 360 AVMEATVDQS LPVRDLQPQP QHGQLFAASF GCISPAVPRG SASRHGLQEP GHGHGPAHPD 420 PRGVTAGHGV AGTEAVAAAA GGVSGRVPPV LLTTTPGPGP DRFQSPLGPG GLLSDAGGGN 480 VGCVGTVAAA SAEVDDRHIS ASAFLEFAGE AGLFTSSGGG GGGLNCGRGG GGGGDSPRSP 540 SHLSVLAAMQ LSRQQQQQQQ QQQQQQSLLL QQQQQQIRQL SRGGLSMQQT MQPGPLYGGT 600 SVPQLMRPSA AMFTAAAAAG LQEGLPRLPG AVAGAGAHGA GSGLQAPGGG GGSSGGYASP 660 PVLVAHGGGA VSDGGRSPVT ASPRHTLQQQ SPYNAHISPH LQQNSLLAQS QQQQQQQQVQ 720 QLQHHEHHHQ QQHEHQLQLA QQLRSHTDSP GRVRMLAAQQ VLRPSSPYRL DEVQQQQRSP 780 LTAPHRATSS QPPIHAQPLY QAEGHCLQQQ PQQQSPYLPQ QQPQQQQQQQ QAMTPFMLHL 840 QQQAAEQLRR RAVGSSSGAA AAVPLQSPPA HHQPPPPPPP PPPPPPQQQQ QQVSAATRLE 900 TVQLPPPPTA SAHPQPPQRR QQQSPDLEHL KTEGGDTSRL GTAGAVGGGG GRQRSPPGRA 960 ATPTPTPRHS RTLPHPHSQP PTQQQQQQQQ GQQVPAMLAD VVPDSTTPGK ADRSGVAVAA 1020 ALARASRLMK RRRASPRSVV KHAPGVSLAE PDAEAGQGPG PGPGPSSGSQ RSHQPSGGGL 1080 SRTRSAAMAS PAGSLQRRTT SLSGIGGGPV RPDISAATAN ATVTATATAN ATATTTSARL 1140 FSESEGEEVQ RRRRDGEDGE EGHEVGREVA IAAGDSDDED GSSDGADSSP DTATVAPSGG 1200 DADEAYGRVG SSRRSRTAIS GGVGAAAAAR GGPDAPDAPV AVGASADTQM IIDPITGLPR 1260 RRAMTQEERM VRNREAAAKS RARRHQYQQN LEQHIRALQQ HSAELRKLLE AHAVPLPPHL 1320 LEQQVRLGDG LPPPPPRTSP PRSRKGIGGR PRKYPLNPDG SKPSRKRRRT STGTALTTAA 1380 TPVPAARGVS AAAVETTGGA SDEDVKPRRV TAGRRTSTAA GGGNDGGSGE GGDGGGGEEG 1440 VRGAGGGNRG GRGRRGRGGG GSRARGRGII GGGGRTGRKK LQSDDVEEDD AGSGPGAAGG 1500 GEEQVRDSGE ERLEQQVVAG ASPRSAGATA AASSGGGGAG GAGGLDISRT VNKAALATEE 1560 ALTPPRPRRS TTTSAVGRLA TEAAVDAVDG DTAVVVVGQS PLRQQPFEMA PFPQYRYASQ 1620 PPVPPVAAPP PPSCVPTSPA NLRPGGEVAA DVTRLDTFGP AEADASAAAT AADPAQPPFT 1680 DPWQLPQWPP PPPPPPPLIP GPPRPSLESP AGPSARPARA PCATDPRVAA ATALLPPLQP 1740 QPPPHGESGP EALGLDDVAS GGAQPAMVLS PGGVGGGDGD GGVLGSLASP GGDIAGSSAD 1800 GGSAGPSGGD MGPFDMLGLG FGDLLGAGFL GQQRQGMVLR SDGVHGGGVV MKAKQVLCVD 1860 DDVLEVHLES LIKSAFGCFL AAQKPNCGMR LKLRPVC* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 1364 | 1368 | RKRRR |
2 | 1364 | 1369 | RKRRRT |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP14371 | 2 | 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Vocar.0001s1183.1.p |