PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0001s0783.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family SBP
Protein Properties Length: 910aa    MW: 96016.7 Da    PI: 8.233
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0001s0783.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.58.8e-2480154175
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 
                          +Cqv+gC +dl++a++y++r++vCe h k+p+  ++g++ rfC qCs+fh++  f+ ++r+C ++L++  + r +
  Vocar.0001s0783.1.p  80 RCQVDGCGVDLTQARKYFQRYRVCERHLKSPSLQMDGRSVRFCDQCSKFHDIIMFEGNRRTCNEKLERTRQARSE 154
                          6*****************************************************************987766644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-2574141IPR004333Transcription factor, SBP-box
PROSITE profilePS5114121.95778155IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.84E-2379155IPR004333Transcription factor, SBP-box
PfamPF031108.3E-2581153IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MKNSTAESIG VGHAEEEVTA VISSVVQQQA LQEPCIGEEA AVKATAKTLA GRLRESDPSS  60
DIDNEQGARK SRSAQRRPLR CQVDGCGVDL TQARKYFQRY RVCERHLKSP SLQMDGRSVR  120
FCDQCSKFHD IIMFEGNRRT CNEKLERTRQ ARSEKRRLHT VQTEGAASCR WGPRRQGTAV  180
LKRQHEADHD RDDNSDDDGD HSWEGNNLTG LLKRSRQQQQ QQQQQQGSLA AAAVLPPPQS  240
LLAPPQAPEQ QQDTKSILAL QRAAFAAAVA CGSDGGANGL GTCAPGGGQV LRPVHRHGYA  300
SGGGGGGGGL AGNHDGGGGG SGCSASSLSS WEDGHPHSQL LRLNSVSSHG SAGGSHESYM  360
VPGTAAAAAA GGGDGTSATA VHGYRNAMGF LREPVGEARH TGVPSTGVPM AAQTAAVLLE  420
LSAMMECGDG PGLGASSGGR APAPARGLGG VHQDLRSRTE AFLLEALKAG RLGYKNLEVP  480
YADAAPAQGR VRSGDDKLYA GGRGRGGGAR AQGQSAIVQQ LQLTATEDFG HDLRSRVPYS  540
EEARGLRGAL YDRAVSSMGR QQQPPIENDS YGSIAGSADG DTDDVAAAVL RLVLASLAAR  600
RGAAQTHNDA VTPGSAVCRT APDPGLRDEP LATPKFILRK EVGDGGLGAA AGGPAFRTSA  660
AGLHCRRPGF RAPSPPHSAA AVRRTMPVLD LTVAPQMREV AAALPPKVAP QGASSDVGPA  720
IGDDSKWETK RYWQRQRQLL QQVAHSSGEY DSVCHLERHG EHQQRQLKLT YPRAEEAMAA  780
AEEKEEQHQH VLQQLQDLLG SGFAAGAGAG GVTSTAAAAM PPLQIPRHRQ QQQHAAANAV  840
QREWQKRLAE AITARQKLGL YGAYGEVDAA ASQWLPLCNE NAEGGCQFKQ PRYMHDKLQQ  900
LLGAQAVLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-13811451175squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1500507GGRGRGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.19e-17squamosa promoter binding protein-like 9