PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang3156s00010.1 | ||||||||
Common Name | LR48_Vigan01g016200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 133aa MW: 15242.7 Da PI: 4.7811 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 46.3 | 7.3e-15 | 13 | 113 | 197 | 296 |
GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsl.eaklpreseerik 284 + gE+++Vn+++ + ++++s sl + ++L+ v +l +++vv ve+e + + s sF+e f+eal++ysa+ dsl ++ ++++ + + Vang3156s00010.1 13 EVGETVIVNCMI-DQWMPNRSFSLVK---TFLDGVTKLWSRLVVSVEEElfnfSRLKSMSFVEFFCEALHHYSAVCDSLgSSVWGSHKMASRL 101 459*********.5678899999999...********************8775556999********************55555666689999 PP GRAS 285 vErellgreivn 296 +E+e+lg +i + Vang3156s00010.1 102 IEKEILGLRILD 113 9***99998875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 2.5E-12 | 13 | 113 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 133 aa Download sequence Send to blast |
MMMEREEDIE GIEVGETVIV NCMIDQWMPN RSFSLVKTFL DGVTKLWSRL VVSVEEELFN 60 FSRLKSMSFV EFFCEALHHY SAVCDSLGSS VWGSHKMASR LIEKEILGLR ILDSAKFLVS 120 LFGGGYWVQF EKG |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang3156s00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414142.1 | 5e-81 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A0L9TJ14 | 1e-79 | A0A0L9TJ14_PHAAN; Uncharacterized protein | ||||
STRING | XP_007159815.1 | 8e-70 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13148 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G59450.1 | 2e-07 | GRAS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|