PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 219aa MW: 25186.2 Da PI: 7.6209

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang1570s00010.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.3	3.2e-19	56	110	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++++++eq++ Le+ F +++++ e++ +LA +lgL+ rqV vWFqNrRa++k+ Vang1570s00010.1 56 RKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKN 110 45589************************************************95 PP
2	HD-ZIP_I/II	114.9	4.8e-37	55	147	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ++kr+ls+eqv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk++++a e++rLe+ev +L+++l+e Vang1570s00010.1 55 NRKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSHLKKSHEANLLEKCRLETEVLKLKDQLSE 147 58****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.103	51	111	IPR001356	Homeobox domain
SMART	SM00389	2.7E-17	54	115	IPR001356	Homeobox domain
Pfam	PF00046	2.0E-16	56	110	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.12E-18	56	120	IPR009057	Homeodomain-like
CDD	cd00086	2.47E-15	56	112	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.6E-20	58	118	IPR009057	Homeodomain-like
PRINTS	PR00031	3.6E-5	82	91	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.6E-5	91	107	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MNHRPFQDNM MFIPQLYPAD APYTQIIAQQ GESKKPKRRR GKKNKGGENG ASEANRKRKL 60 SAEQVNLLEQ NFGNEHKLES ERKDRLALEL GLDPRQVAVW FQNRRARWKN KKLEEEYSHL 120 KKSHEANLLE KCRLETEVLK LKDQLSEAEK EIQRLLESGD RVPSNSSSSS QSQSQSQSME 180 AVDPAFFGVF GVDGYDDDVF YGPETHCINA LEWINLYM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	42	PKRRRGKK
2	37	58	RRRGKKNKGGENGASEANRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00473	DAP	Transfer from AT4G36740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang1570s00010.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017426828.1	1e-162	PREDICTED: homeobox-leucine zipper protein ATHB-40
Swissprot	O23208	2e-69	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A0L9UQY2	1e-161	A0A0L9UQY2_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T4D0	1e-161	A0A0S3T4D0_PHAAN; Uncharacterized protein
STRING	XP_007156908.1	1e-123	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4789	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	6e-57	homeobox protein 40

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]