PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ZF-HD

Protein Properties

Length: 270aa MW: 30044.9 Da PI: 8.3228

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g18130.4	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.1	7.8e-32	65	121	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++vrY+eClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC CHRnFHR+eve Vang11g18130.4 65 KAVRYRECLKNHAAAMGGNATDGCGEFMPS-GEEGTIEALNCSACHCHRNFHRKEVEG 121 689************************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.5E-28	67	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-25	67	130	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.5E-30	68	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.33	69	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	8.7E-31	189	262	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-19	193	261	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.7E-27	200	256	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048574	Biological Process	long-day photoperiodism, flowering
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MELSSQEGEI PIPINSTTYG GGHGNGHGHG LMIHHDPPHH NHIISSTAPT NGTPTMHQED 60 HGYKKAVRYR ECLKNHAAAM GGNATDGCGE FMPSGEEGTI EALNCSACHC HRNFHRKEVE 120 GEPSSCDYHP FNRRRLILGP HKNLLPPEAL GYPTGNILPS RSVPPHQMIM PYSIGHLPSE 180 SDEQEDGGGM VQPRPSQLVK KRFRTKFTQE QKEKMLNFAE RVGWKIQKQE ESVVQQFCQE 240 IGVKRRVLKV WMHNNKHNLA KKNPPTAAA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-24	201	258	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269\|PubMed:22319055}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g18130.4

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by exposure to long days. {ECO:0000269\|PubMed:22319055}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017421745.1	0.0	PREDICTED: zinc-finger homeodomain protein 4
Swissprot	Q9M9S0	5e-77	ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBL	A0A0L9TSQ2	0.0	A0A0L9TSQ2_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R9F5	0.0	A0A0S3R9F5_PHAAN; Uncharacterized protein
STRING	XP_007154109.1	1e-177	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	1e-76	homeobox protein 31

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]