PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g17820.1

Common Name

LR48_Vigan01g314100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 310aa MW: 34651.4 Da PI: 9.8642

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g17820.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69	9.4e-22	36	126	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W+ +e+laLi+a+r+++ +l+rg+lk+++W+ev++++ ++p+qC++k+e+l+kry+ + +++++ s+ s++++f+ ++ Vang11g17820.1 36 CWSPDETLALIDAYRDKWYSLGRGNLKATHWQEVADAVanrcPNASPPKTPVQCRHKMEKLRKRYRTEIQRARSLpVSRFNSSWVHFKLMD 126 7********************************99977666677799*********************97799999****997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-21	35	128	No hit	No description
PROSITE profile	PS50090	6.121	37	97	IPR017877	Myb-like domain
SMART	SM00595	3.5E-11	44	133	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MASPPPPPDP PSAVPLALIP LPLPAPTSSR RLPPPCWSPD ETLALIDAYR DKWYSLGRGN 60 LKATHWQEVA DAVANRCPNA SPPKTPVQCR HKMEKLRKRY RTEIQRARSL PVSRFNSSWV 120 HFKLMDSMEK GPSPVKPEHD SDSDNDDDDN DDDQDLYQEI NQNGHTRSLN RLYRNGFPGS 180 GAGGFRIRIP TGMPPAQPGS GSKIFGKVGN QKFSPNLNQN PSPNSNFGKK RERDPVGEVV 240 AAIKVLGDGF VRMEHMKMEM AREMETMRME MEMKRTEMIL ESQQRIVEAF AKAVSEKKKA 300 KTVSSPQQP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g17820.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017421509.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A0L9TSR9	0.0	A0A0L9TSR9_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R9V0	0.0	A0A0S3R9V0_PHAAN; Uncharacterized protein
STRING	XP_007154189.1	1e-172	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4638	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-67	Trihelix family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]